(45 nodes) (2018) Responses to climatic and pathogen threats differ in biodynamic and conventional vines. network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	STS-3	Stilbene synthase 3; Mediates resistance to pathogens which are sensitive to stilbenes; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (392 aa)
	ETR1	Ethylene receptor; May act early in the ethylene signal transduction pathway, possibly as an ethylene receptor, or as a regulator of the pathway. (741 aa)
	PAL1	Phenylalanine ammonia-lyase. (717 aa)
	F3H	Flavanone 3-hydroxylase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (363 aa)
	D7SKH2_VITVI	Uncharacterized protein. (376 aa)
	LOXA	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (901 aa)
	D7TAQ3_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (920 aa)
	D7TCC4_VITVI	Uncharacterized protein. (376 aa)
	D7TCJ8_VITVI	Phenylalanine ammonia-lyase. (665 aa)
	LOXO	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (927 aa)
	F6HZ11_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (869 aa)
	EDS1	Uncharacterized protein. (596 aa)
	F6GUA5_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (791 aa)
	F6GUA6_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (793 aa)
	F6GUA7_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (903 aa)
	F6GUC9_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (598 aa)
	F6GUD0_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (859 aa)
	F6H9C9_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (505 aa)
	F6HB90_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (399 aa)
	F6HB91_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (903 aa)
	F6HDN6_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (876 aa)
	F6HEB0_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB1_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB2_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB3_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	PAL	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB8_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	PAL-2	Phenylalanine ammonia-lyase. (710 aa)
	PAL-3	Phenylalanine ammonia-lyase. (734 aa)
	F6HEC2_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HGU6_VITVI	Phenylalanine ammonia-lyase. (895 aa)
	F6HJV0_VITVI	Chitin-binding type-1 domain-containing protein. (198 aa)
	PAL7	Phenylalanine ammonia-lyase. (723 aa)
	STS	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (392 aa)
	RS	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (392 aa)
	F6HP39_VITVI	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (392 aa)
	PAL2	Phenylalanine ammonia-lyase. (710 aa)
	GST1	Uncharacterized protein; Belongs to the GST superfamily. (221 aa)
	F6HRH9_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (477 aa)
	F6HS12_VITVI	Phenylalanine ammonia-lyase. (469 aa)
	F6HWH9_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (638 aa)
	LOX	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (859 aa)
	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (337 aa)
	ACT1	Uncharacterized protein. (460 aa)
	F6I2I6_VITVI	Uncharacterized protein. (308 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACT1	D7TAQ3_VITVI	F6I0I5	D7TAQ3	Uncharacterized protein.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.501
ACT1	D7TCJ8_VITVI	F6I0I5	D7TCJ8	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.613
ACT1	EDS1	F6I0I5	F6GSX7	Uncharacterized protein.	Uncharacterized protein.	0.404
ACT1	F3H	F6I0I5	A2ICC8	Uncharacterized protein.	Flavanone 3-hydroxylase; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.612
ACT1	F6GUA6_VITVI	F6I0I5	F6GUA6	Uncharacterized protein.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.442
ACT1	F6GUA7_VITVI	F6I0I5	F6GUA7	Uncharacterized protein.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.441
ACT1	F6GUC9_VITVI	F6I0I5	F6GUC9	Uncharacterized protein.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.441
ACT1	F6HEB0_VITVI	F6I0I5	F6HEB0	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.613
ACT1	F6HEB1_VITVI	F6I0I5	F6HEB1	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.613
ACT1	F6HEB2_VITVI	F6I0I5	F6HEB2	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.613
ACT1	F6HEB3_VITVI	F6I0I5	F6HEB3	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.613
ACT1	F6HEB8_VITVI	F6I0I5	F6HEB8	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.613
ACT1	F6HEC2_VITVI	F6I0I5	F6HEC2	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.613
ACT1	F6HGU6_VITVI	F6I0I5	F6HGU6	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.613
ACT1	F6HP39_VITVI	F6I0I5	F6HP39	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.477
ACT1	F6HS12_VITVI	F6I0I5	F6HS12	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.613
ACT1	F6HZ11_VITVI	F6I0I5	F6HZ11	Uncharacterized protein.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.427
ACT1	F6I2I6_VITVI	F6I0I5	F6I2I6	Uncharacterized protein.	Uncharacterized protein.	0.613
ACT1	GAPDH	F6I0I5	F6GSG7	Uncharacterized protein.	Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	0.743
ACT1	LOX	F6I0I5	F6HZ10	Uncharacterized protein.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.474