(63 nodes) (2019) Exploration of the Effect of Blue Light on Functional Metabolite Accumulation in Longan Embryonic Calli via RNA Sequencing. network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6I2I6_VITVI	Uncharacterized protein. (308 aa)
	PHYA	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1124 aa)
	HY5	Basic leucine zipper transcription factor HY5. (169 aa)
	myb15	R2R3 MYB15 transcription factor. (253 aa)
	PAL1	Phenylalanine ammonia-lyase. (717 aa)
	VITISV_011381	Uncharacterized protein; Belongs to the protein kinase superfamily. (497 aa)
	D7SJK0_VITVI	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (228 aa)
	D7SL33_VITVI	Uncharacterized protein. (518 aa)
	D7SNZ6_VITVI	Uncharacterized protein. (558 aa)
	D7SRG5_VITVI	Aminotran_1_2 domain-containing protein. (187 aa)
	UFGT	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (456 aa)
	D7TCJ8_VITVI	Phenylalanine ammonia-lyase. (665 aa)
	D7TIQ2_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (552 aa)
	E0CQW8_VITVI	Uncharacterized protein. (523 aa)
	CRY1	Photolyase/cryptochrome alpha/beta domain-containing protein. (691 aa)
	E0CTH3_VITVI	Aminotran_1_2 domain-containing protein. (419 aa)
	E0CTH7_VITVI	Aminotran_1_2 domain-containing protein. (419 aa)
	F6GTB4_VITVI	Uncharacterized protein. (431 aa)
	F6GY07_VITVI	Uncharacterized protein; Belongs to the protein kinase superfamily. (489 aa)
	F6H218_VITVI	Aminotran_1_2 domain-containing protein. (422 aa)
	F6H4C0_VITVI	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (1205 aa)
	F6H5G2_VITVI	Aminotran_1_2 domain-containing protein. (419 aa)
	F6H6T5_VITVI	Uncharacterized protein. (527 aa)
	PHYB	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1129 aa)
	F6HA54_VITVI	Uncharacterized protein. (534 aa)
	F6HA55_VITVI	Uncharacterized protein. (511 aa)
	F6HA58_VITVI	Uncharacterized protein. (307 aa)
	F6HA63_VITVI	Uncharacterized protein. (307 aa)
	F6HA82_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (508 aa)
	F6HA87_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (508 aa)
	VvF3'5'h	Uncharacterized protein; Belongs to the cytochrome P450 family. (508 aa)
	F6HEB0_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB1_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB2_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB3_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	PAL	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB8_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	PAL-2	Phenylalanine ammonia-lyase. (710 aa)
	PAL-3	Phenylalanine ammonia-lyase. (734 aa)
	F6HEC2_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEC3_VITVI	Uncharacterized protein. (558 aa)
	F6HEK1_VITVI	Uncharacterized protein. (536 aa)
	F6HGU6_VITVI	Phenylalanine ammonia-lyase. (895 aa)
	F6HHQ7_VITVI	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (415 aa)
	F6HI79_VITVI	Aminotran_1_2 domain-containing protein. (174 aa)
	F6HIW4_VITVI	Uncharacterized protein. (520 aa)
	CCD4b	Uncharacterized protein. (589 aa)
	CCD4a	Uncharacterized protein. (599 aa)
	F6HL04_VITVI	Uncharacterized protein. (526 aa)
	NCED2	Uncharacterized protein. (605 aa)
	PAL7	Phenylalanine ammonia-lyase. (723 aa)
	PAL2	Phenylalanine ammonia-lyase. (710 aa)
	NCED1	Uncharacterized protein. (609 aa)
	F6HRX1_VITVI	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (440 aa)
	F6HS12_VITVI	Phenylalanine ammonia-lyase. (469 aa)
	F6HS58_VITVI	Uncharacterized protein. (575 aa)
	F6HUP4_VITVI	Uncharacterized protein. (528 aa)
	F6HYQ9_VITVI	Uncharacterized protein. (554 aa)
	F6I0Q9_VITVI	Uncharacterized protein. (604 aa)
	F6I3K8_VITVI	Uncharacterized protein. (580 aa)
	F6I3P3_VITVI	Uncharacterized protein. (568 aa)
	MYC2	BHLH domain-containing protein. (604 aa)
	F6I755_VITVI	Uncharacterized protein. (569 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRY1	HY5	E0CRK8	A5BJR5	Photolyase/cryptochrome alpha/beta domain-containing protein.	Basic leucine zipper transcription factor HY5.	0.817
CRY1	PHYA	E0CRK8	A5B9C2	Photolyase/cryptochrome alpha/beta domain-containing protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.923
CRY1	PHYB	E0CRK8	F6H723	Photolyase/cryptochrome alpha/beta domain-containing protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.906
D7SRG5_VITVI	D7TCJ8_VITVI	D7SRG5	D7TCJ8	Aminotran_1_2 domain-containing protein.	Phenylalanine ammonia-lyase.	0.652
D7SRG5_VITVI	F6HEB0_VITVI	D7SRG5	F6HEB0	Aminotran_1_2 domain-containing protein.	Phenylalanine ammonia-lyase.	0.652
D7SRG5_VITVI	F6HEB1_VITVI	D7SRG5	F6HEB1	Aminotran_1_2 domain-containing protein.	Phenylalanine ammonia-lyase.	0.652
D7SRG5_VITVI	F6HEB2_VITVI	D7SRG5	F6HEB2	Aminotran_1_2 domain-containing protein.	Phenylalanine ammonia-lyase.	0.652
D7SRG5_VITVI	F6HEB3_VITVI	D7SRG5	F6HEB3	Aminotran_1_2 domain-containing protein.	Phenylalanine ammonia-lyase.	0.652
D7SRG5_VITVI	F6HEB8_VITVI	D7SRG5	F6HEB8	Aminotran_1_2 domain-containing protein.	Phenylalanine ammonia-lyase.	0.652
D7SRG5_VITVI	F6HEC2_VITVI	D7SRG5	F6HEC2	Aminotran_1_2 domain-containing protein.	Phenylalanine ammonia-lyase.	0.652
D7SRG5_VITVI	F6HGU6_VITVI	D7SRG5	F6HGU6	Aminotran_1_2 domain-containing protein.	Phenylalanine ammonia-lyase.	0.652
D7SRG5_VITVI	F6HS12_VITVI	D7SRG5	F6HS12	Aminotran_1_2 domain-containing protein.	Phenylalanine ammonia-lyase.	0.652
D7SRG5_VITVI	F6I2I6_VITVI	D7SRG5	F6I2I6	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.652
D7SRG5_VITVI	PAL	D7SRG5	F6HEB5	Aminotran_1_2 domain-containing protein.	Phenylalanine ammonia-lyase.	0.652
D7SRG5_VITVI	PAL-2	D7SRG5	F6HEB9	Aminotran_1_2 domain-containing protein.	Phenylalanine ammonia-lyase.	0.652
D7SRG5_VITVI	PAL-3	D7SRG5	F6HEC0	Aminotran_1_2 domain-containing protein.	Phenylalanine ammonia-lyase.	0.652
D7SRG5_VITVI	PAL1	D7SRG5	A5BPT8	Aminotran_1_2 domain-containing protein.	Phenylalanine ammonia-lyase.	0.652
D7SRG5_VITVI	PAL2	D7SRG5	F6HR33	Aminotran_1_2 domain-containing protein.	Phenylalanine ammonia-lyase.	0.652
D7SRG5_VITVI	PAL7	D7SRG5	F6HNF5	Aminotran_1_2 domain-containing protein.	Phenylalanine ammonia-lyase.	0.652
D7TCJ8_VITVI	D7SRG5_VITVI	D7TCJ8	D7SRG5	Phenylalanine ammonia-lyase.	Aminotran_1_2 domain-containing protein.	0.652