(32 nodes) (2019) The NAC family transcription factor GmNAC42-1 regulates biosynthesis of the anticancer and neuroprotective glyceollins in soybean. network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	myb15	R2R3 MYB15 transcription factor. (253 aa)
	PAL1	Phenylalanine ammonia-lyase. (717 aa)
	D7T989_VITVI	Uncharacterized protein. (254 aa)
	D7TCJ8_VITVI	Phenylalanine ammonia-lyase. (665 aa)
	D7TTC2_VITVI	Uncharacterized protein. (234 aa)
	E0CU17_VITVI	NAC domain-containing protein. (298 aa)
	F6GZF8_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (561 aa)
	F6GZP5_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (498 aa)
	F6GZP6_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (499 aa)
	F6HEB0_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB1_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB2_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB3_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	PAL	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB8_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	PAL-2	Phenylalanine ammonia-lyase. (710 aa)
	PAL-3	Phenylalanine ammonia-lyase. (734 aa)
	F6HEC2_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HGU6_VITVI	Phenylalanine ammonia-lyase. (895 aa)
	PAL7	Phenylalanine ammonia-lyase. (723 aa)
	STS	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (392 aa)
	RS	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (392 aa)
	F6HP39_VITVI	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (392 aa)
	PAL2	Phenylalanine ammonia-lyase. (710 aa)
	F6HS12_VITVI	Phenylalanine ammonia-lyase. (469 aa)
	F6HSW8_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (502 aa)
	F6HSX0_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (499 aa)
	F6HSX1_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (504 aa)
	F6HXB4_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (471 aa)
	F6I2G3_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (365 aa)
	F6I2I6_VITVI	Uncharacterized protein. (308 aa)
	STS-3	Stilbene synthase 3; Mediates resistance to pathogens which are sensitive to stilbenes; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (392 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7TCJ8_VITVI	F6HP39_VITVI	D7TCJ8	F6HP39	Phenylalanine ammonia-lyase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.624
D7TCJ8_VITVI	RS	D7TCJ8	F6HP29	Phenylalanine ammonia-lyase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.624
D7TCJ8_VITVI	STS	D7TCJ8	F6HP15	Phenylalanine ammonia-lyase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.626
D7TCJ8_VITVI	STS-3	D7TCJ8	P51071	Phenylalanine ammonia-lyase.	Stilbene synthase 3; Mediates resistance to pathogens which are sensitive to stilbenes; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.625
D7TTC2_VITVI	PAL1	D7TTC2	A5BPT8	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.422
F6GZF8_VITVI	PAL1	F6GZF8	A5BPT8	Uncharacterized protein; Belongs to the cytochrome P450 family.	Phenylalanine ammonia-lyase.	0.422
F6GZP5_VITVI	PAL1	F6GZP5	A5BPT8	Uncharacterized protein; Belongs to the cytochrome P450 family.	Phenylalanine ammonia-lyase.	0.422
F6GZP6_VITVI	PAL1	F6GZP6	A5BPT8	Uncharacterized protein; Belongs to the cytochrome P450 family.	Phenylalanine ammonia-lyase.	0.422
F6HEB0_VITVI	F6HP39_VITVI	F6HEB0	F6HP39	Phenylalanine ammonia-lyase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.623
F6HEB0_VITVI	RS	F6HEB0	F6HP29	Phenylalanine ammonia-lyase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.624
F6HEB0_VITVI	STS	F6HEB0	F6HP15	Phenylalanine ammonia-lyase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.623
F6HEB0_VITVI	STS-3	F6HEB0	P51071	Phenylalanine ammonia-lyase.	Stilbene synthase 3; Mediates resistance to pathogens which are sensitive to stilbenes; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.623
F6HEB1_VITVI	F6HP39_VITVI	F6HEB1	F6HP39	Phenylalanine ammonia-lyase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.623
F6HEB1_VITVI	RS	F6HEB1	F6HP29	Phenylalanine ammonia-lyase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.623
F6HEB1_VITVI	STS	F6HEB1	F6HP15	Phenylalanine ammonia-lyase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.623
F6HEB1_VITVI	STS-3	F6HEB1	P51071	Phenylalanine ammonia-lyase.	Stilbene synthase 3; Mediates resistance to pathogens which are sensitive to stilbenes; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.623
F6HEB2_VITVI	F6HEC2_VITVI	F6HEB2	F6HEC2	Phenylalanine ammonia-lyase.	Phenylalanine ammonia-lyase.	0.425
F6HEB2_VITVI	F6HP39_VITVI	F6HEB2	F6HP39	Phenylalanine ammonia-lyase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.623
F6HEB2_VITVI	RS	F6HEB2	F6HP29	Phenylalanine ammonia-lyase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.623
F6HEB2_VITVI	STS	F6HEB2	F6HP15	Phenylalanine ammonia-lyase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.623