(32 nodes) (2019) Somatic Embryogenesis Induction in Woody Species: The Future After OMICs Data Assessment. network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6GV28_VITVI	Uncharacterized protein. (255 aa)
	VITISV_010341	Histone H3; Belongs to the histone H3 family. (136 aa)
	F6I3K8_VITVI	Uncharacterized protein. (580 aa)
	F6I3P3_VITVI	Uncharacterized protein. (568 aa)
	F6I755_VITVI	Uncharacterized protein. (569 aa)
	Gr	Glutathione reductase; Maintains high levels of reduced glutathione. (496 aa)
	APX	PEROXIDASE_4 domain-containing protein; Belongs to the peroxidase family. (253 aa)
	D7TL39_VITVI	Homeobox domain-containing protein. (236 aa)
	D7SZ96_VITVI	Histone H3; Belongs to the histone H3 family. (147 aa)
	GOR	Glutathione reductase; Maintains high levels of reduced glutathione. (559 aa)
	WUS	Homeobox domain-containing protein. (280 aa)
	D7SNZ6_VITVI	Uncharacterized protein. (558 aa)
	D7UCN1_VITVI	Histone domain-containing protein. (156 aa)
	D7SL33_VITVI	Uncharacterized protein. (518 aa)
	VITISV_011381	Uncharacterized protein; Belongs to the protein kinase superfamily. (497 aa)
	VITISV_031803	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (266 aa)
	TIR1	F-box domain-containing protein. (576 aa)
	F6HL04_VITVI	Uncharacterized protein. (526 aa)
	F6HIW4_VITVI	Uncharacterized protein. (520 aa)
	F3H	Flavanone 3-hydroxylase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (363 aa)
	F6HEK1_VITVI	Uncharacterized protein. (536 aa)
	F6HE24_VITVI	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (185 aa)
	F6HA54_VITVI	Uncharacterized protein. (534 aa)
	F6H6T5_VITVI	Uncharacterized protein. (527 aa)
	F6GY07_VITVI	Uncharacterized protein; Belongs to the protein kinase superfamily. (489 aa)
	F6GUV3_VITVI	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (300 aa)
	F6GTB4_VITVI	Uncharacterized protein. (431 aa)
	E0CQW8_VITVI	Uncharacterized protein. (523 aa)
	VITISV_004842	Histone H3; Belongs to the histone H3 family. (136 aa)
	F6HYQ9_VITVI	Uncharacterized protein. (554 aa)
	F6I0Q9_VITVI	Uncharacterized protein. (604 aa)
	F6HUP4_VITVI	Uncharacterized protein. (528 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APX	GOR	D7TQA5	D7SQK6	PEROXIDASE_4 domain-containing protein; Belongs to the peroxidase family.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.724
APX	Gr	D7TQA5	D7TS92	PEROXIDASE_4 domain-containing protein; Belongs to the peroxidase family.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.813
D7SL33_VITVI	GOR	D7SL33	D7SQK6	Uncharacterized protein.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.428
D7SL33_VITVI	Gr	D7SL33	D7TS92	Uncharacterized protein.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.428
D7SNZ6_VITVI	GOR	D7SNZ6	D7SQK6	Uncharacterized protein.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.428
D7SNZ6_VITVI	Gr	D7SNZ6	D7TS92	Uncharacterized protein.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.428
D7TL39_VITVI	F6GV28_VITVI	D7TL39	F6GV28	Homeobox domain-containing protein.	Uncharacterized protein.	0.429
D7TL39_VITVI	F6HE24_VITVI	D7TL39	F6HE24	Homeobox domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.405
E0CQW8_VITVI	GOR	E0CQW8	D7SQK6	Uncharacterized protein.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.428
E0CQW8_VITVI	Gr	E0CQW8	D7TS92	Uncharacterized protein.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.428
F6GTB4_VITVI	GOR	F6GTB4	D7SQK6	Uncharacterized protein.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.426
F6GTB4_VITVI	Gr	F6GTB4	D7TS92	Uncharacterized protein.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.426
F6GUV3_VITVI	VITISV_031803	F6GUV3	A5B6U5	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.901
F6GV28_VITVI	D7TL39_VITVI	F6GV28	D7TL39	Uncharacterized protein.	Homeobox domain-containing protein.	0.429
F6GV28_VITVI	F6I0Q9_VITVI	F6GV28	F6I0Q9	Uncharacterized protein.	Uncharacterized protein.	0.504
F6GY07_VITVI	GOR	F6GY07	D7SQK6	Uncharacterized protein; Belongs to the protein kinase superfamily.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.428
F6GY07_VITVI	Gr	F6GY07	D7TS92	Uncharacterized protein; Belongs to the protein kinase superfamily.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.428
F6H6T5_VITVI	GOR	F6H6T5	D7SQK6	Uncharacterized protein.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.428
F6H6T5_VITVI	Gr	F6H6T5	D7TS92	Uncharacterized protein.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.428
F6HA54_VITVI	F6HYQ9_VITVI	F6HA54	F6HYQ9	Uncharacterized protein.	Uncharacterized protein.	0.679