(67 nodes) (2022) Hybrid Assembly and Annotation of the Genome of the Indian Punica granatum, a Superfood. network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6H775_VITVI	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (740 aa)
	F6H5J2_VITVI	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (372 aa)
	F6H5G8_VITVI	Uncharacterized protein. (243 aa)
	F6H2I9_VITVI	Epimerase domain-containing protein. (402 aa)
	FLS3	Uncharacterized protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (680 aa)
	FLS1-2	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (335 aa)
	FLS1	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (322 aa)
	F6H0K8_VITVI	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (372 aa)
	F6GWZ3_VITVI	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (501 aa)
	F6GWZ0_VITVI	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (502 aa)
	D7TCJ8_VITVI	Phenylalanine ammonia-lyase. (665 aa)
	D7TIQ2_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (552 aa)
	CCOAMT	Uncharacterized protein. (242 aa)
	D7TRP7_VITVI	Hydrolase_4 domain-containing protein. (319 aa)
	COMT	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (363 aa)
	D7U297_VITVI	Hydrolase_4 domain-containing protein. (349 aa)
	D7U5I5_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (468 aa)
	ANR	Anthocyanidin reductase ((2S)-flavan-3-ol-forming); Produces the terminal flavan-3-ol monomers required for the formation of proanthocyanidins or condensed tannins in leaves and flowers, as well as in the skin and seeds of developing berries. Behaves as a reductase and as a C-3 epimerase. Catalyzes the double reduction of anthocyanidins, producing a mixture of (2S,3S)- and (2S,3R)-flavan-3-ols. The enzyme catalyzes sequential hydride transfers to C-2 and C-4, respectively and epimerization at C-3 is achieved by tautomerization that occurs between the two hydride transfers. Converts cya [...] (338 aa)
	D7U877_VITVI	Epimerase domain-containing protein. (338 aa)
	FLS5	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (332 aa)
	F3H	Flavanone 3-hydroxylase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (363 aa)
	ANS	Leucocyanidin oxygenase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (355 aa)
	VITISV_020423	Hydrolase_4 domain-containing protein. (314 aa)
	VITISV_027403	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (358 aa)
	PAL1	Phenylalanine ammonia-lyase. (717 aa)
	F6GWQ4_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (514 aa)
	VITISV_026676	Uncharacterized protein; Belongs to the cytochrome P450 family. (505 aa)
	VITISV_028011	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (359 aa)
	LAR2	NmrA domain-containing protein. (358 aa)
	D7SRA2_VITVI	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (614 aa)
	D7SVV2_VITVI	Uncharacterized protein. (247 aa)
	D7T940_VITVI	Hydrolase_4 domain-containing protein. (417 aa)
	D7TBB5_VITVI	Uncharacterized protein. (236 aa)
	D7TBB6_VITVI	Uncharacterized protein. (295 aa)
	lar1	Leucoanthocyanidin reductase 1. (346 aa)
	F6I6P6_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (534 aa)
	F6I3K5_VITVI	Methyltransf_2 domain-containing protein. (188 aa)
	F6I2Z2_VITVI	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (357 aa)
	F6I2Y9_VITVI	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (358 aa)
	F6I2I6_VITVI	Uncharacterized protein. (308 aa)
	F6HX77_VITVI	Hydrolase_4 domain-containing protein. (321 aa)
	F6HSS2_VITVI	Hydrolase_4 domain-containing protein. (385 aa)
	F6HS12_VITVI	Phenylalanine ammonia-lyase. (469 aa)
	PAL2	Phenylalanine ammonia-lyase. (710 aa)
	F6HNG8_VITVI	Hydrolase_4 domain-containing protein. (329 aa)
	PAL7	Phenylalanine ammonia-lyase. (723 aa)
	F6HKE5_VITVI	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (358 aa)
	F6HGU6_VITVI	Phenylalanine ammonia-lyase. (895 aa)
	4CL	Uncharacterized protein. (548 aa)
	F6HEC2_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	PAL-3	Phenylalanine ammonia-lyase. (734 aa)
	PAL-2	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB8_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	PAL	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB3_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB2_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB1_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB0_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HCP3_VITVI	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (480 aa)
	F6HAJ7_VITVI	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (476 aa)
	VvF3'5'h	Uncharacterized protein; Belongs to the cytochrome P450 family. (508 aa)
	F6HA87_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (508 aa)
	F6HA82_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (508 aa)
	F6HA63_VITVI	Uncharacterized protein. (307 aa)
	F6HA58_VITVI	Uncharacterized protein. (307 aa)
	F6HA55_VITVI	Uncharacterized protein. (511 aa)
	F6H9P8_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (532 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
4CL	ANR	F6HEF8	D7U6G6	Uncharacterized protein.	Anthocyanidin reductase ((2S)-flavan-3-ol-forming); Produces the terminal flavan-3-ol monomers required for the formation of proanthocyanidins or condensed tannins in leaves and flowers, as well as in the skin and seeds of developing berries. Behaves as a reductase and as a C-3 epimerase. Catalyzes the double reduction of anthocyanidins, producing a mixture of (2S,3S)- and (2S,3R)-flavan-3-ols. The enzyme catalyzes sequential hydride transfers to C-2 and C-4, respectively and epimerization at C-3 is achieved by tautomerization that occurs between the two hydride transfers. Converts cya [...]	0.682
4CL	ANS	F6HEF8	A2ICC9	Uncharacterized protein.	Leucocyanidin oxygenase; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.712
4CL	CCOAMT	F6HEF8	D7TPG4	Uncharacterized protein.	Uncharacterized protein.	0.906
4CL	COMT	F6HEF8	D7TVU3	Uncharacterized protein.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.859
4CL	D7SRA2_VITVI	F6HEF8	D7SRA2	Uncharacterized protein.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.858
4CL	D7SVV2_VITVI	F6HEF8	D7SVV2	Uncharacterized protein.	Uncharacterized protein.	0.906
4CL	D7T940_VITVI	F6HEF8	D7T940	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.859
4CL	D7TBB5_VITVI	F6HEF8	D7TBB5	Uncharacterized protein.	Uncharacterized protein.	0.871
4CL	D7TBB6_VITVI	F6HEF8	D7TBB6	Uncharacterized protein.	Uncharacterized protein.	0.871
4CL	D7TCJ8_VITVI	F6HEF8	D7TCJ8	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.848
4CL	D7TIQ2_VITVI	F6HEF8	D7TIQ2	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.528
4CL	D7TRP7_VITVI	F6HEF8	D7TRP7	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.821
4CL	D7U297_VITVI	F6HEF8	D7U297	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.816
4CL	D7U5I5_VITVI	F6HEF8	D7U5I5	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.949
4CL	D7U877_VITVI	F6HEF8	D7U877	Uncharacterized protein.	Epimerase domain-containing protein.	0.976
4CL	F3H	F6HEF8	A2ICC8	Uncharacterized protein.	Flavanone 3-hydroxylase; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.806
4CL	F6GWQ4_VITVI	F6HEF8	F6GWQ4	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.943
4CL	F6H0K8_VITVI	F6HEF8	F6H0K8	Uncharacterized protein.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.858
4CL	F6H2I9_VITVI	F6HEF8	F6H2I9	Uncharacterized protein.	Epimerase domain-containing protein.	0.664
4CL	F6H5G8_VITVI	F6HEF8	F6H5G8	Uncharacterized protein.	Uncharacterized protein.	0.871