(33 nodes) (2023) Agroecological Management of the Grey Mould Fungus Botrytis cinerea by Plant Growth-Promoting Bacteria. network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PAL2	Phenylalanine ammonia-lyase. (710 aa)
	LOX	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (859 aa)
	F6HZ11_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (869 aa)
	F6I2I6_VITVI	Uncharacterized protein. (308 aa)
	F6HGU6_VITVI	Phenylalanine ammonia-lyase. (895 aa)
	XT1	Uncharacterized protein. (516 aa)
	F6HEC2_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	PAL-3	Phenylalanine ammonia-lyase. (734 aa)
	PAL-2	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB8_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	PAL	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB3_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB2_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB1_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB0_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HDN6_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (876 aa)
	F6HB91_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (903 aa)
	F6HB90_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (399 aa)
	F6H9C9_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (505 aa)
	F6GUD0_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (859 aa)
	F6GUC9_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (598 aa)
	F6GUA7_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (903 aa)
	F6GUA6_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (793 aa)
	F6GUA5_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (791 aa)
	LOXO	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (927 aa)
	D7TCJ8_VITVI	Phenylalanine ammonia-lyase. (665 aa)
	D7TAQ3_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (920 aa)
	LOXA	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (901 aa)
	PAL1	Phenylalanine ammonia-lyase. (717 aa)
	F6HS12_VITVI	Phenylalanine ammonia-lyase. (469 aa)
	F6HRH9_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (477 aa)
	PAL7	Phenylalanine ammonia-lyase. (723 aa)
	F6HWH9_VITVI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (638 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7TAQ3_VITVI	D7TCJ8_VITVI	D7TAQ3	D7TCJ8	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Phenylalanine ammonia-lyase.	0.612
D7TAQ3_VITVI	F6HDN6_VITVI	D7TAQ3	F6HDN6	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.668
D7TAQ3_VITVI	F6HEB0_VITVI	D7TAQ3	F6HEB0	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Phenylalanine ammonia-lyase.	0.612
D7TAQ3_VITVI	F6HEB1_VITVI	D7TAQ3	F6HEB1	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Phenylalanine ammonia-lyase.	0.613
D7TAQ3_VITVI	F6HEB2_VITVI	D7TAQ3	F6HEB2	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Phenylalanine ammonia-lyase.	0.612
D7TAQ3_VITVI	F6HEB3_VITVI	D7TAQ3	F6HEB3	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Phenylalanine ammonia-lyase.	0.612
D7TAQ3_VITVI	F6HEB8_VITVI	D7TAQ3	F6HEB8	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Phenylalanine ammonia-lyase.	0.612
D7TAQ3_VITVI	F6HEC2_VITVI	D7TAQ3	F6HEC2	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Phenylalanine ammonia-lyase.	0.612
D7TAQ3_VITVI	F6HGU6_VITVI	D7TAQ3	F6HGU6	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Phenylalanine ammonia-lyase.	0.612
D7TAQ3_VITVI	F6HS12_VITVI	D7TAQ3	F6HS12	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Phenylalanine ammonia-lyase.	0.613
D7TAQ3_VITVI	F6HZ11_VITVI	D7TAQ3	F6HZ11	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.665
D7TAQ3_VITVI	F6I2I6_VITVI	D7TAQ3	F6I2I6	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Uncharacterized protein.	0.612
D7TAQ3_VITVI	LOX	D7TAQ3	F6HZ10	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.677
D7TAQ3_VITVI	PAL	D7TAQ3	F6HEB5	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Phenylalanine ammonia-lyase.	0.612
D7TAQ3_VITVI	PAL-2	D7TAQ3	F6HEB9	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Phenylalanine ammonia-lyase.	0.612
D7TAQ3_VITVI	PAL-3	D7TAQ3	F6HEC0	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Phenylalanine ammonia-lyase.	0.612
D7TAQ3_VITVI	PAL1	D7TAQ3	A5BPT8	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Phenylalanine ammonia-lyase.	0.612
D7TAQ3_VITVI	PAL2	D7TAQ3	F6HR33	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Phenylalanine ammonia-lyase.	0.612
D7TAQ3_VITVI	PAL7	D7TAQ3	F6HNF5	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Phenylalanine ammonia-lyase.	0.612
D7TCJ8_VITVI	D7TAQ3_VITVI	D7TCJ8	D7TAQ3	Phenylalanine ammonia-lyase.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.612