(5 nodes) BRIGHT, ARID (A/T-rich interaction domain) domain network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6I0B5_VITVI	Uncharacterized protein. (578 aa)
	D7UAU1_VITVI	Uncharacterized protein. (331 aa)
	D7UDG1_VITVI	Uncharacterized protein. (449 aa)
	E0CQU8_VITVI	Uncharacterized protein. (324 aa)
	F6GWG2_VITVI	Uncharacterized protein. (482 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7UAU1_VITVI	E0CQU8_VITVI	D7UAU1	E0CQU8	Uncharacterized protein.	Uncharacterized protein.	0.831
D7UAU1_VITVI	F6GWG2_VITVI	D7UAU1	F6GWG2	Uncharacterized protein.	Uncharacterized protein.	0.827
D7UDG1_VITVI	F6GWG2_VITVI	D7UDG1	F6GWG2	Uncharacterized protein.	Uncharacterized protein.	0.404
E0CQU8_VITVI	D7UAU1_VITVI	E0CQU8	D7UAU1	Uncharacterized protein.	Uncharacterized protein.	0.831
E0CQU8_VITVI	F6GWG2_VITVI	E0CQU8	F6GWG2	Uncharacterized protein.	Uncharacterized protein.	0.830
F6GWG2_VITVI	D7UAU1_VITVI	F6GWG2	D7UAU1	Uncharacterized protein.	Uncharacterized protein.	0.827
F6GWG2_VITVI	D7UDG1_VITVI	F6GWG2	D7UDG1	Uncharacterized protein.	Uncharacterized protein.	0.404
F6GWG2_VITVI	E0CQU8_VITVI	F6GWG2	E0CQU8	Uncharacterized protein.	Uncharacterized protein.	0.830