STRINGSTRING
STM4085 STM4085 T4469 T4469 YPO2263 YPO2263 TTE2704 TTE2704 T2471 T2471
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
STM4085Putative GlpX protein; Predicted by orpheus program; predicted by glimmer program. (357 aa)
T4469Putative fructose-1,6-bisphosphatase; Predicted by orpheus program; predicted by glimmer program. (344 aa)
YPO2263Putative mannose-6-phosphate isomer; Predicted by orpheus program; predicted by glimmer program; Belongs to the mannose-6-phosphate isomerase type 1 family. (401 aa)
TTE2704Putative phosphomannomutase; Predicted by orpheus program; predicted by glimmer program. (569 aa)
T2471Hypothetical ROK family protein; Predicted by orpheus program; predicted by glimmer program. (312 aa)
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.