STRINGSTRING
Y1198 Y1198 STY4866 STY4866 YPO2161 YPO2161 PLU4137 PLU4137 CJ0087 CJ0087 Y2787 Y2787
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Y1198Putative asparagine synthetase B, glutamine-hydrolyzing; Predicted by orpheus program; predicted by glimmer program. (555 aa)
STY4866Hypothetical aspartate racemase; Predicted by orpheus program; predicted by glimmer program. (226 aa)
YPO2161Putative L-asparaginase I; Predicted by orpheus program; predicted by glimmer program. (299 aa)
PLU4137Putative aspartate ammonia-lyase; Predicted by orpheus program; predicted by glimmer program. (486 aa)
CJ0087Hypothetical aspartate ammonia-lyase; Predicted by orpheus program; predicted by glimmer program. (495 aa)
Y2787Putative periplasmic L-asparaginase II; Predicted by orpheus program; predicted by glimmer program; Belongs to the asparaginase 1 family. (354 aa)
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.