STRINGSTRING
FRUB FRUB Y1488 Y1488 PBPRB0217 PBPRB0217 PLU4045 PLU4045 PBPRA2718 PBPRA2718
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
FRUBPutative PTS system, fructose-specific IIA/FPR component; Predicted by orpheus program; predicted by glimmer program. (372 aa)
Y1488Putative phosphocarrier protein HPr; Predicted by orpheus program; predicted by glimmer program. (85 aa)
PBPRB0217Hypothetical phosphoenolpyruvate-protein phosphotransferase; Predicted by orpheus program; predicted by glimmer program; Belongs to the PEP-utilizing enzyme family. (835 aa)
PLU4045Putative phosphocarrier protein NPr; Predicted by orpheus program; predicted by glimmer program. (91 aa)
PBPRA2718Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (268 aa)
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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