STRINGSTRING
PBPRA2718 PBPRA2718 FRUB FRUB VVA0192 VVA0192 VVA0188 VVA0188 C3964 C3964 PTXA PTXA C4416 C4416
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PBPRA2718Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (268 aa)
FRUBPutative PTS system, fructose-specific IIA/FPR component; Predicted by orpheus program; predicted by glimmer program. (372 aa)
VVA0192Putative PTS system, fructose-specific IIABC component; Predicted by orpheus program; predicted by glimmer program. (635 aa)
VVA0188Putative PTS system, fructose-specific IIABC component; Predicted by orpheus program; predicted by glimmer program. (631 aa)
C3964Putative nitrogen regulatory IIA protein PtsN; Predicted by orpheus program; predicted by glimmer program. (143 aa)
PTXAPutative phosphotransferase systemmannitol/fructose-specific IIA domain; Predicted by orpheus program; predicted by glimmer program. (176 aa)
C4416Putative mannitol-specific IIABC component, PTS system; Predicted by orpheus program; predicted by glimmer program. (650 aa)
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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