STRINGSTRING
ATU3137 ATU3137 VP1911 VP1911 VV0507 VV0507 SMB20295 SMB20295 C3754 C3754 AGR_L_33 AGR_L_33 RB1267 RB1267 DCTP DCTP
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ATU3137Hypothetical dicarboxylate-binding periplasmic protein; Predicted by orpheus program; predicted by glimmer program. (255 aa)
VP1911Hypothetical extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (361 aa)
VV0507Hypothetical extracellular solute-binding protein,family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (361 aa)
SMB20295Putative TRAP-type C4-dicarboxylate transport system, periplasmic component; Predicted by orpheus program; predicted by glimmer program. (322 aa)
C3754Hypothetical C4-dicarboxylate binding protein; Predicted by orpheus program; predicted by glimmer program. (330 aa)
AGR_L_33Putative C4-dicarboxylate transport system,periplasmic component; Predicted by orpheus program; predicted by glimmer program. (144 aa)
RB1267Putative dicarboxylate-binding periplasmic protein; Predicted by orpheus program; predicted by glimmer program. (119 aa)
DCTPPutative C4-dicarboxylate-binding periplasmic protein; Predicted by orpheus program; predicted by glimmer program. (328 aa)
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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