5 items (Penicillium vulpinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6R7S8	Uncharacterized protein. (515 aa)
	A0A1V6RCU2	Uncharacterized protein. (482 aa)
	A0A1V6RDN7	Uncharacterized protein. (243 aa)
	A0A1V6RFT9	Amine oxidase. (488 aa)
	A0A1V6RV35	Uncharacterized protein. (496 aa)

Your Current Organism:

Penicillium vulpinum

NCBI taxonomy Id: 29845
Other names: P. vulpinum, Penicillium claviforme

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6R7S8	A0A1V6RCU2	Uncharacterized protein.	Uncharacterized protein.	0.877
A0A1V6R7S8	A0A1V6RDN7	Uncharacterized protein.	Uncharacterized protein.	0.887
A0A1V6R7S8	A0A1V6RFT9	Uncharacterized protein.	Amine oxidase.	0.901
A0A1V6R7S8	A0A1V6RV35	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1V6RCU2	A0A1V6R7S8	Uncharacterized protein.	Uncharacterized protein.	0.877
A0A1V6RCU2	A0A1V6RFT9	Uncharacterized protein.	Amine oxidase.	0.880
A0A1V6RCU2	A0A1V6RV35	Uncharacterized protein.	Uncharacterized protein.	0.881
A0A1V6RDN7	A0A1V6R7S8	Uncharacterized protein.	Uncharacterized protein.	0.887
A0A1V6RDN7	A0A1V6RFT9	Uncharacterized protein.	Amine oxidase.	0.900
A0A1V6RFT9	A0A1V6R7S8	Amine oxidase.	Uncharacterized protein.	0.901
A0A1V6RFT9	A0A1V6RCU2	Amine oxidase.	Uncharacterized protein.	0.880
A0A1V6RFT9	A0A1V6RDN7	Amine oxidase.	Uncharacterized protein.	0.900
A0A1V6RFT9	A0A1V6RV35	Amine oxidase.	Uncharacterized protein.	0.883
A0A1V6RV35	A0A1V6R7S8	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1V6RV35	A0A1V6RCU2	Uncharacterized protein.	Uncharacterized protein.	0.881
A0A1V6RV35	A0A1V6RFT9	Uncharacterized protein.	Amine oxidase.	0.883