5 items (Penicillium vulpinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6RTH7	Uncharacterized protein. (488 aa)
	A0A1V6RTN8	Uncharacterized protein. (468 aa)
	A0A1V6RXT7	Uncharacterized protein. (520 aa)
	A0A1V6S6U8	Uncharacterized protein. (378 aa)
	A0A1V6S8H3	Uncharacterized protein. (319 aa)

Your Current Organism:

Penicillium vulpinum

NCBI taxonomy Id: 29845
Other names: P. vulpinum, Penicillium claviforme

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6RTH7	A0A1V6RTN8	Uncharacterized protein.	Uncharacterized protein.	0.804
A0A1V6RTH7	A0A1V6RXT7	Uncharacterized protein.	Uncharacterized protein.	0.824
A0A1V6RTH7	A0A1V6S6U8	Uncharacterized protein.	Uncharacterized protein.	0.791
A0A1V6RTH7	A0A1V6S8H3	Uncharacterized protein.	Uncharacterized protein.	0.823
A0A1V6RTN8	A0A1V6RTH7	Uncharacterized protein.	Uncharacterized protein.	0.804
A0A1V6RTN8	A0A1V6RXT7	Uncharacterized protein.	Uncharacterized protein.	0.975
A0A1V6RTN8	A0A1V6S6U8	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A1V6RTN8	A0A1V6S8H3	Uncharacterized protein.	Uncharacterized protein.	0.978
A0A1V6RXT7	A0A1V6RTH7	Uncharacterized protein.	Uncharacterized protein.	0.824
A0A1V6RXT7	A0A1V6RTN8	Uncharacterized protein.	Uncharacterized protein.	0.975
A0A1V6RXT7	A0A1V6S6U8	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A1V6RXT7	A0A1V6S8H3	Uncharacterized protein.	Uncharacterized protein.	0.981
A0A1V6S6U8	A0A1V6RTH7	Uncharacterized protein.	Uncharacterized protein.	0.791
A0A1V6S6U8	A0A1V6RTN8	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A1V6S6U8	A0A1V6RXT7	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A1V6S6U8	A0A1V6S8H3	Uncharacterized protein.	Uncharacterized protein.	0.949
A0A1V6S8H3	A0A1V6RTH7	Uncharacterized protein.	Uncharacterized protein.	0.823
A0A1V6S8H3	A0A1V6RTN8	Uncharacterized protein.	Uncharacterized protein.	0.978
A0A1V6S8H3	A0A1V6RXT7	Uncharacterized protein.	Uncharacterized protein.	0.981
A0A1V6S8H3	A0A1V6S6U8	Uncharacterized protein.	Uncharacterized protein.	0.949