(5 nodes) Nuclear SCF ubiquitin ligase complex, and Cyclic nucleotide-binding, conserved site network (Penicillium vulpinum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6RDW6	Uncharacterized protein. (666 aa)
	A0A1V6RXS9	Uncharacterized protein. (215 aa)
	A0A1V6S0Q2	Uncharacterized protein. (924 aa)
	A0A1V6S4U4	Uncharacterized protein. (1085 aa)
	A0A1V6S9S2	Uncharacterized protein. (705 aa)

Your Current Organism:

Penicillium vulpinum

NCBI taxonomy Id: 29845
Other names: P. vulpinum, Penicillium claviforme

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6RDW6	A0A1V6RXS9	Uncharacterized protein.	Uncharacterized protein.	0.899
A0A1V6RDW6	A0A1V6S0Q2	Uncharacterized protein.	Uncharacterized protein.	0.713
A0A1V6RDW6	A0A1V6S4U4	Uncharacterized protein.	Uncharacterized protein.	0.846
A0A1V6RDW6	A0A1V6S9S2	Uncharacterized protein.	Uncharacterized protein.	0.745
A0A1V6RXS9	A0A1V6RDW6	Uncharacterized protein.	Uncharacterized protein.	0.899
A0A1V6RXS9	A0A1V6S0Q2	Uncharacterized protein.	Uncharacterized protein.	0.971
A0A1V6RXS9	A0A1V6S4U4	Uncharacterized protein.	Uncharacterized protein.	0.899
A0A1V6RXS9	A0A1V6S9S2	Uncharacterized protein.	Uncharacterized protein.	0.931
A0A1V6S0Q2	A0A1V6RDW6	Uncharacterized protein.	Uncharacterized protein.	0.713
A0A1V6S0Q2	A0A1V6RXS9	Uncharacterized protein.	Uncharacterized protein.	0.971
A0A1V6S0Q2	A0A1V6S4U4	Uncharacterized protein.	Uncharacterized protein.	0.713
A0A1V6S0Q2	A0A1V6S9S2	Uncharacterized protein.	Uncharacterized protein.	0.644
A0A1V6S4U4	A0A1V6RDW6	Uncharacterized protein.	Uncharacterized protein.	0.846
A0A1V6S4U4	A0A1V6RXS9	Uncharacterized protein.	Uncharacterized protein.	0.899
A0A1V6S4U4	A0A1V6S0Q2	Uncharacterized protein.	Uncharacterized protein.	0.713
A0A1V6S4U4	A0A1V6S9S2	Uncharacterized protein.	Uncharacterized protein.	0.712
A0A1V6S9S2	A0A1V6RDW6	Uncharacterized protein.	Uncharacterized protein.	0.745
A0A1V6S9S2	A0A1V6RXS9	Uncharacterized protein.	Uncharacterized protein.	0.931
A0A1V6S9S2	A0A1V6S0Q2	Uncharacterized protein.	Uncharacterized protein.	0.644
A0A1V6S9S2	A0A1V6S4U4	Uncharacterized protein.	Uncharacterized protein.	0.712