(70 nodes) Mixed, incl. Nuclear pore, and Nucleocytoplasmic carrier activity network (Penicillium vulpinum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6QZ57	Uncharacterized protein. (463 aa)
	A0A1V6R4S6	Uncharacterized protein. (225 aa)
	A0A1V6R5I1	Uncharacterized protein. (486 aa)
	A0A1V6R7G8	Uncharacterized protein. (432 aa)
	A0A1V6RDH6	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (510 aa)
	A0A1V6RF27	Uncharacterized protein. (408 aa)
	A0A1V6RFW1	Uncharacterized protein. (167 aa)
	A0A1V6RG58	Importin N-terminal domain-containing protein. (1090 aa)
	A0A1V6RH42	Uncharacterized protein. (1256 aa)
	A0A1V6RN22	Uncharacterized protein. (261 aa)
	A0A1V6RNT8	Importin N-terminal domain-containing protein. (869 aa)
	A0A1V6RS13	RanBD1 domain-containing protein. (703 aa)
	A0A1V6RSR3	Importin subunit alpha; Belongs to the importin alpha family. (552 aa)
	A0A1V6RTF4	Importin N-terminal domain-containing protein. (959 aa)
	A0A1V6RTR0	Uncharacterized protein. (614 aa)
	A0A1V6RUP6	RanBD1 domain-containing protein. (1445 aa)
	A0A1V6RUS5	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (213 aa)
	A0A1V6RV18	Uncharacterized protein. (529 aa)
	A0A1V6RV59	SLD3 domain-containing protein. (982 aa)
	A0A1V6RVP4	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (1159 aa)
	A0A1V6RWE4	Uncharacterized protein. (500 aa)
	A0A1V6RWE9	Uncharacterized protein. (1568 aa)
	A0A1V6RWG6	Uncharacterized protein; Belongs to the DEAD box helicase family. (690 aa)
	A0A1V6RWV1	Uncharacterized protein. (658 aa)
	A0A1V6RX80	Uncharacterized protein. (408 aa)
	A0A1V6RXY2	WD_REPEATS_REGION domain-containing protein. (361 aa)
	A0A1V6RY16	Importin N-terminal domain-containing protein. (1072 aa)
	A0A1V6RYE3	Uncharacterized protein. (717 aa)
	A0A1V6RZ67	Uncharacterized protein. (77 aa)
	A0A1V6RZF7	Uncharacterized protein. (1324 aa)
	A0A1V6S0C9	Uncharacterized protein. (348 aa)
	A0A1V6S0K6	Nsp1_C domain-containing protein. (659 aa)
	A0A1V6S0N0	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (211 aa)
	A0A1V6S173	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (1043 aa)
	A0A1V6S1Y2	Nup54 domain-containing protein. (433 aa)
	A0A1V6S297	Nup188_C domain-containing protein. (1812 aa)
	A0A1V6S2L5	Uncharacterized protein. (254 aa)
	A0A1V6S2W2	Importin N-terminal domain-containing protein. (1095 aa)
	A0A1V6S3E3	Ima1_N domain-containing protein. (883 aa)
	A0A1V6S3I8	Uncharacterized protein. (730 aa)
	A0A1V6S3Q0	Uncharacterized protein. (1324 aa)
	A0A1V6S3V7	Uncharacterized protein. (1375 aa)
	A0A1V6S3X8	TPR_MLP1_2 domain-containing protein. (2018 aa)
	A0A1V6S418	Uncharacterized protein. (1356 aa)
	A0A1V6S4Q7	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (396 aa)
	A0A1V6S5I5	Uncharacterized protein. (198 aa)
	A0A1V6S5N8	Uncharacterized protein. (418 aa)
	A0A1V6S639	ELYS domain-containing protein. (309 aa)
	A0A1V6S649	Xpo1 domain-containing protein. (1256 aa)
	A0A1V6S764	Uncharacterized protein; Belongs to the DEAD box helicase family. (488 aa)
	A0A1V6S774	Uncharacterized protein. (258 aa)
	A0A1V6S7J4	Uncharacterized protein. (149 aa)
	A0A1V6S7J6	Peptidase S59 domain-containing protein. (2007 aa)
	A0A1V6S7X0	RanBD1 domain-containing protein. (252 aa)
	A0A1V6S8B4	SUN domain-containing protein. (659 aa)
	A0A1V6S8G0	Uncharacterized protein. (1665 aa)
	A0A1V6S8K2	Uncharacterized protein. (851 aa)
	A0A1V6S8Z3	HTH APSES-type domain-containing protein. (447 aa)
	A0A1V6S9N9	Brr6_like_C_C domain-containing protein. (464 aa)
	A0A1V6SC65	Uncharacterized protein. (565 aa)
	A0A1V6SC70	Uncharacterized protein. (678 aa)
	A0A1V6SCU9	Aldo_ket_red domain-containing protein. (339 aa)
	A0A1V6SD54	NTF2 domain-containing protein. (161 aa)
	A0A1V6SD66	PCI domain-containing protein. (453 aa)
	A0A1V6SD88	Uncharacterized protein. (509 aa)
	A0A1V6SDL7	DUF1996 domain-containing protein. (495 aa)
	A0A1V6SDX1	Uncharacterized protein. (287 aa)
	A0A1V6SEA8	Uncharacterized protein. (1440 aa)
	A0A1V6SFM9	Uncharacterized protein. (110 aa)
	A0A1V6SGB9	Uncharacterized protein. (893 aa)

Your Current Organism:

Penicillium vulpinum

NCBI taxonomy Id: 29845
Other names: P. vulpinum, Penicillium claviforme

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6QZ57	A0A1V6R5I1	Uncharacterized protein.	Uncharacterized protein.	0.523
A0A1V6QZ57	A0A1V6RN22	Uncharacterized protein.	Uncharacterized protein.	0.429
A0A1V6QZ57	A0A1V6RSR3	Uncharacterized protein.	Importin subunit alpha; Belongs to the importin alpha family.	0.412
A0A1V6QZ57	A0A1V6RVP4	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.572
A0A1V6QZ57	A0A1V6RWE9	Uncharacterized protein.	Uncharacterized protein.	0.429
A0A1V6QZ57	A0A1V6S0K6	Uncharacterized protein.	Nsp1_C domain-containing protein.	0.515
A0A1V6QZ57	A0A1V6S173	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.585
A0A1V6QZ57	A0A1V6S3Q0	Uncharacterized protein.	Uncharacterized protein.	0.573
A0A1V6QZ57	A0A1V6S3V7	Uncharacterized protein.	Uncharacterized protein.	0.532
A0A1V6QZ57	A0A1V6S4Q7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.553
A0A1V6QZ57	A0A1V6S639	Uncharacterized protein.	ELYS domain-containing protein.	0.490
A0A1V6QZ57	A0A1V6S774	Uncharacterized protein.	Uncharacterized protein.	0.407
A0A1V6QZ57	A0A1V6S7J6	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.523
A0A1V6QZ57	A0A1V6S7X0	Uncharacterized protein.	RanBD1 domain-containing protein.	0.429
A0A1V6QZ57	A0A1V6S8G0	Uncharacterized protein.	Uncharacterized protein.	0.519
A0A1V6QZ57	A0A1V6S8K2	Uncharacterized protein.	Uncharacterized protein.	0.429
A0A1V6R4S6	A0A1V6RF27	Uncharacterized protein.	Uncharacterized protein.	0.495
A0A1V6R4S6	A0A1V6SDL7	Uncharacterized protein.	DUF1996 domain-containing protein.	0.495
A0A1V6R5I1	A0A1V6QZ57	Uncharacterized protein.	Uncharacterized protein.	0.523
A0A1V6R5I1	A0A1V6R7G8	Uncharacterized protein.	Uncharacterized protein.	0.523