11 items (Penicillium vulpinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6RAD6	Uncharacterized protein. (225 aa)
	A0A1V6REH2	DUF2236 domain-containing protein. (422 aa)
	A0A1V6RX57	Uncharacterized protein. (395 aa)
	A0A1V6RYS2	Uncharacterized protein. (612 aa)
	A0A1V6RYU4	Uncharacterized protein. (930 aa)
	A0A1V6S301	Uncharacterized protein. (1403 aa)
	A0A1V6S4D6	Uncharacterized protein. (188 aa)
	A0A1V6S4K9	Uncharacterized membrane protein. (162 aa)
	A0A1V6SAA6	Uncharacterized protein. (877 aa)
	A0A1V6SD01	Uncharacterized protein. (175 aa)
	A0A1V6SEX9	RING-type domain-containing protein. (372 aa)

Your Current Organism:

Penicillium vulpinum

NCBI taxonomy Id: 29845
Other names: P. vulpinum, Penicillium claviforme

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6RX57	A0A1V6RYS2	Uncharacterized protein.	Uncharacterized protein.	0.468
A0A1V6RX57	A0A1V6RYU4	Uncharacterized protein.	Uncharacterized protein.	0.468
A0A1V6RX57	A0A1V6S301	Uncharacterized protein.	Uncharacterized protein.	0.468
A0A1V6RYS2	A0A1V6RX57	Uncharacterized protein.	Uncharacterized protein.	0.468
A0A1V6RYS2	A0A1V6S4K9	Uncharacterized protein.	Uncharacterized membrane protein.	0.468
A0A1V6RYS2	A0A1V6SD01	Uncharacterized protein.	Uncharacterized protein.	0.468
A0A1V6RYS2	A0A1V6SEX9	Uncharacterized protein.	RING-type domain-containing protein.	0.468
A0A1V6RYU4	A0A1V6RX57	Uncharacterized protein.	Uncharacterized protein.	0.468
A0A1V6RYU4	A0A1V6S4K9	Uncharacterized protein.	Uncharacterized membrane protein.	0.468
A0A1V6RYU4	A0A1V6SD01	Uncharacterized protein.	Uncharacterized protein.	0.468
A0A1V6RYU4	A0A1V6SEX9	Uncharacterized protein.	RING-type domain-containing protein.	0.468
A0A1V6S301	A0A1V6RX57	Uncharacterized protein.	Uncharacterized protein.	0.468
A0A1V6S301	A0A1V6S4K9	Uncharacterized protein.	Uncharacterized membrane protein.	0.468
A0A1V6S301	A0A1V6SD01	Uncharacterized protein.	Uncharacterized protein.	0.468
A0A1V6S301	A0A1V6SEX9	Uncharacterized protein.	RING-type domain-containing protein.	0.468
A0A1V6S4K9	A0A1V6RYS2	Uncharacterized membrane protein.	Uncharacterized protein.	0.468
A0A1V6S4K9	A0A1V6RYU4	Uncharacterized membrane protein.	Uncharacterized protein.	0.468
A0A1V6S4K9	A0A1V6S301	Uncharacterized membrane protein.	Uncharacterized protein.	0.468
A0A1V6SD01	A0A1V6RYS2	Uncharacterized protein.	Uncharacterized protein.	0.468
A0A1V6SD01	A0A1V6RYU4	Uncharacterized protein.	Uncharacterized protein.	0.468