15 items (Penicillium vulpinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6S003	Cysteine dioxygenase. (215 aa)
	A0A1V6RZG8	Lactamase_B domain-containing protein. (397 aa)
	A0A1V6RYZ8	Uncharacterized protein. (198 aa)
	ADI1	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). (177 aa)
	A0A1V6R654	Uncharacterized protein. (424 aa)
	A0A1V6RCU2	Uncharacterized protein. (482 aa)
	A0A1V6RK20	Uncharacterized protein. (441 aa)
	A0A1V6RNJ3	Uncharacterized protein. (484 aa)
	A0A1V6SAY7	Cysteine dioxygenase. (215 aa)
	A0A1V6S9V0	Uncharacterized protein. (1112 aa)
	A0A1V6S8J8	4-hydroxyphenylpyruvate dioxygenase. (407 aa)
	A0A1V6S8E7	Uncharacterized protein. (1075 aa)
	A0A1V6S2Q7	Uncharacterized protein. (292 aa)
	A0A1V6S2I5	Uncharacterized protein. (449 aa)
	A0A1V6S280	4-hydroxyphenylpyruvate dioxygenase. (404 aa)

Your Current Organism:

Penicillium vulpinum

NCBI taxonomy Id: 29845
Other names: P. vulpinum, Penicillium claviforme

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6R654	A0A1V6RCU2	Uncharacterized protein.	Uncharacterized protein.	0.877
A0A1V6RCU2	A0A1V6R654	Uncharacterized protein.	Uncharacterized protein.	0.877
A0A1V6RK20	A0A1V6RNJ3	Uncharacterized protein.	Uncharacterized protein.	0.635
A0A1V6RK20	A0A1V6S280	Uncharacterized protein.	4-hydroxyphenylpyruvate dioxygenase.	0.912
A0A1V6RK20	A0A1V6S8J8	Uncharacterized protein.	4-hydroxyphenylpyruvate dioxygenase.	0.912
A0A1V6RNJ3	A0A1V6RK20	Uncharacterized protein.	Uncharacterized protein.	0.635
A0A1V6RNJ3	A0A1V6S280	Uncharacterized protein.	4-hydroxyphenylpyruvate dioxygenase.	0.972
A0A1V6RNJ3	A0A1V6S2I5	Uncharacterized protein.	Uncharacterized protein.	0.881
A0A1V6RNJ3	A0A1V6S8J8	Uncharacterized protein.	4-hydroxyphenylpyruvate dioxygenase.	0.972
A0A1V6RZG8	A0A1V6S280	Lactamase_B domain-containing protein.	4-hydroxyphenylpyruvate dioxygenase.	0.597
A0A1V6RZG8	A0A1V6S8J8	Lactamase_B domain-containing protein.	4-hydroxyphenylpyruvate dioxygenase.	0.597
A0A1V6S003	A0A1V6SAY7	Cysteine dioxygenase.	Cysteine dioxygenase.	0.805
A0A1V6S280	A0A1V6RK20	4-hydroxyphenylpyruvate dioxygenase.	Uncharacterized protein.	0.912
A0A1V6S280	A0A1V6RNJ3	4-hydroxyphenylpyruvate dioxygenase.	Uncharacterized protein.	0.972
A0A1V6S280	A0A1V6RZG8	4-hydroxyphenylpyruvate dioxygenase.	Lactamase_B domain-containing protein.	0.597
A0A1V6S280	A0A1V6S2I5	4-hydroxyphenylpyruvate dioxygenase.	Uncharacterized protein.	0.982
A0A1V6S280	A0A1V6S2Q7	4-hydroxyphenylpyruvate dioxygenase.	Uncharacterized protein.	0.585
A0A1V6S280	A0A1V6S8J8	4-hydroxyphenylpyruvate dioxygenase.	4-hydroxyphenylpyruvate dioxygenase.	0.880
A0A1V6S2I5	A0A1V6RNJ3	Uncharacterized protein.	Uncharacterized protein.	0.881
A0A1V6S2I5	A0A1V6S280	Uncharacterized protein.	4-hydroxyphenylpyruvate dioxygenase.	0.982