12 items (Penicillium vulpinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6R4M5	Uncharacterized protein. (624 aa)
	A0A1V6RDF8	Uncharacterized protein. (1566 aa)
	A0A1V6RDP5	DRMBL domain-containing protein. (844 aa)
	A0A1V6REK8	Uncharacterized protein. (383 aa)
	A0A1V6RN65	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (781 aa)
	A0A1V6RRP0	DNA polymerase. (1104 aa)
	A0A1V6RT22	Uncharacterized protein. (261 aa)
	A0A1V6RT87	zf-C2HE domain-containing protein. (286 aa)
	A0A1V6S6K3	Uncharacterized protein. (734 aa)
	A0A1V6S750	Endo/exonuclease/phosphatase domain-containing protein. (624 aa)
	A0A1V6SBK3	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2227 aa)
	A0A1V6SC44	Uncharacterized protein. (738 aa)

Your Current Organism:

Penicillium vulpinum

NCBI taxonomy Id: 29845
Other names: P. vulpinum, Penicillium claviforme

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6RDF8	A0A1V6RN65	Uncharacterized protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.791
A0A1V6RDF8	A0A1V6S6K3	Uncharacterized protein.	Uncharacterized protein.	0.507
A0A1V6RDP5	A0A1V6RN65	DRMBL domain-containing protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.816
A0A1V6RDP5	A0A1V6S6K3	DRMBL domain-containing protein.	Uncharacterized protein.	0.661
A0A1V6RN65	A0A1V6RDF8	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Uncharacterized protein.	0.791
A0A1V6RN65	A0A1V6RDP5	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	DRMBL domain-containing protein.	0.816
A0A1V6RN65	A0A1V6RRP0	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	DNA polymerase.	0.809
A0A1V6RN65	A0A1V6RT22	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Uncharacterized protein.	0.791
A0A1V6RN65	A0A1V6S6K3	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Uncharacterized protein.	0.986
A0A1V6RN65	A0A1V6S750	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Endo/exonuclease/phosphatase domain-containing protein.	0.549
A0A1V6RN65	A0A1V6SBK3	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.846
A0A1V6RN65	A0A1V6SC44	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Uncharacterized protein.	0.791
A0A1V6RRP0	A0A1V6RN65	DNA polymerase.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.809
A0A1V6RRP0	A0A1V6S6K3	DNA polymerase.	Uncharacterized protein.	0.926
A0A1V6RRP0	A0A1V6S750	DNA polymerase.	Endo/exonuclease/phosphatase domain-containing protein.	0.768
A0A1V6RRP0	A0A1V6SBK3	DNA polymerase.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.980
A0A1V6RT22	A0A1V6RN65	Uncharacterized protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.791
A0A1V6RT22	A0A1V6S6K3	Uncharacterized protein.	Uncharacterized protein.	0.507
A0A1V6RT87	A0A1V6S6K3	zf-C2HE domain-containing protein.	Uncharacterized protein.	0.517
A0A1V6RT87	A0A1V6S750	zf-C2HE domain-containing protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.545