(40 nodes) Ribosome assembly network (Penicillium vulpinum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6SF37	CP-type G domain-containing protein. (678 aa)
	A0A1V6SFX1	Ribosomal_L16 domain-containing protein. (225 aa)
	A0A1V6S0C0	Uncharacterized protein. (362 aa)
	A0A1V6RJZ8	WD_REPEATS_REGION domain-containing protein. (898 aa)
	A0A1V6RGL0	WD_REPEATS_REGION domain-containing protein. (514 aa)
	A0A1V6RVF0	Uncharacterized protein. (338 aa)
	A0A1V6RV14	Uncharacterized protein. (308 aa)
	A0A1V6RUY4	Uncharacterized protein. (197 aa)
	A0A1V6RTN5	Ribosomal_L18_c domain-containing protein. (301 aa)
	A0A1V6RT70	W2 domain-containing protein. (412 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (303 aa)
	A0A1V6S0Y8	RNA helicase. (629 aa)
	A0A1V6S0M2	C3H1-type domain-containing protein. (682 aa)
	A0A1V6S0F1	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (246 aa)
	A0A1V6SCM0	Uncharacterized protein. (831 aa)
	A0A1V6RF97	Brix domain-containing protein. (340 aa)
	A0A1V6RDV8	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4904 aa)
	A0A1V6RAB8	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (172 aa)
	A0A1V6S022	Tr-type G domain-containing protein. (1079 aa)
	A0A1V6S792	Uncharacterized protein. (287 aa)
	A0A1V6SCT3	Ribosomal_L16 domain-containing protein. (221 aa)
	A0A1V6S378	Ribosomal_L23eN domain-containing protein. (149 aa)
	A0A1V6S828	Exonuclease domain-containing protein. (292 aa)
	A0A1V6S9D2	Uncharacterized protein. (68 aa)
	A0A1V6SAP0	Uncharacterized protein. (149 aa)
	A0A1V6SCD9	Ribosomal_S7 domain-containing protein. (377 aa)
	A0A1V6SCH3	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
	TIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (247 aa)
	A0A1V6S5R6	40S ribosomal protein S27. (82 aa)
	A0A1V6S6L1	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (335 aa)
	A0A1V6S6V9	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (433 aa)
	A0A1V6RWM7	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (211 aa)
	A0A1V6RZ71	Uncharacterized protein. (233 aa)
	A0A1V6SF63	WD_REPEATS_REGION domain-containing protein. (515 aa)
	A0A1V6RFD2	Brix domain-containing protein. (361 aa)
	A0A1V6RSX8	Uncharacterized protein. (1804 aa)
	A0A1V6RSX1	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	A0A1V6RSG9	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (184 aa)
	A0A1V6RMT8	Uncharacterized protein. (819 aa)
	A0A1V6S2M5	Brix domain-containing protein. (447 aa)

Your Current Organism:

Penicillium vulpinum

NCBI taxonomy Id: 29845
Other names: P. vulpinum, Penicillium claviforme

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1V6RAB8	A0A1V6RMT8	A0A1V6RAB8	A0A1V6RMT8	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.409
A0A1V6RAB8	A0A1V6RSX1	A0A1V6RAB8	A0A1V6RSX1	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.999
A0A1V6RAB8	A0A1V6RSX8	A0A1V6RAB8	A0A1V6RSX8	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.989
A0A1V6RAB8	A0A1V6RT70	A0A1V6RAB8	A0A1V6RT70	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	W2 domain-containing protein.	0.974
A0A1V6RAB8	A0A1V6RTN5	A0A1V6RAB8	A0A1V6RTN5	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosomal_L18_c domain-containing protein.	0.999
A0A1V6RAB8	A0A1V6RUY4	A0A1V6RAB8	A0A1V6RUY4	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.998
A0A1V6RAB8	A0A1V6RVF0	A0A1V6RAB8	A0A1V6RVF0	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.676
A0A1V6RAB8	A0A1V6RWM7	A0A1V6RAB8	A0A1V6RWM7	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.999
A0A1V6RAB8	A0A1V6RZ71	A0A1V6RAB8	A0A1V6RZ71	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.996
A0A1V6RAB8	A0A1V6S022	A0A1V6RAB8	A0A1V6S022	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Tr-type G domain-containing protein.	0.951
A0A1V6RAB8	A0A1V6S0F1	A0A1V6RAB8	A0A1V6S0F1	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.989
A0A1V6RAB8	A0A1V6S0Y8	A0A1V6RAB8	A0A1V6S0Y8	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	RNA helicase.	0.409
A0A1V6RAB8	A0A1V6S378	A0A1V6RAB8	A0A1V6S378	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosomal_L23eN domain-containing protein.	0.999
A0A1V6RAB8	A0A1V6S5R6	A0A1V6RAB8	A0A1V6S5R6	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S27.	0.999
A0A1V6RAB8	A0A1V6S6L1	A0A1V6RAB8	A0A1V6S6L1	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999
A0A1V6RAB8	A0A1V6S6V9	A0A1V6RAB8	A0A1V6S6V9	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.574
A0A1V6RAB8	A0A1V6S9D2	A0A1V6RAB8	A0A1V6S9D2	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.999
A0A1V6RAB8	A0A1V6SAP0	A0A1V6RAB8	A0A1V6SAP0	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.999
A0A1V6RAB8	A0A1V6SCD9	A0A1V6RAB8	A0A1V6SCD9	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosomal_S7 domain-containing protein.	0.996
A0A1V6RAB8	A0A1V6SCH3	A0A1V6RAB8	A0A1V6SCH3	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.998