9 items (Penicillium vulpinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6SG41	UmuC domain-containing protein. (646 aa)
	A0A1V6S7D3	Zn(2)-C6 fungal-type domain-containing protein. (388 aa)
	A0A1V6S5N5	DNA polymerase. (1700 aa)
	A0A1V6RVE7	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1161 aa)
	A0A1V6RTT5	HORMA domain-containing protein. (298 aa)
	A0A1V6RTI0	Zn(2)-C6 fungal-type domain-containing protein. (444 aa)
	A0A1V6RS54	BRCT domain-containing protein. (341 aa)
	A0A1V6RDX6	UmuC domain-containing protein. (628 aa)
	A0A1V6SCE3	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (867 aa)

Your Current Organism:

Penicillium vulpinum

NCBI taxonomy Id: 29845
Other names: P. vulpinum, Penicillium claviforme

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6RDX6	A0A1V6RS54	UmuC domain-containing protein.	BRCT domain-containing protein.	0.903
A0A1V6RDX6	A0A1V6RTI0	UmuC domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.903
A0A1V6RDX6	A0A1V6RTT5	UmuC domain-containing protein.	HORMA domain-containing protein.	0.903
A0A1V6RDX6	A0A1V6RVE7	UmuC domain-containing protein.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.915
A0A1V6RDX6	A0A1V6S5N5	UmuC domain-containing protein.	DNA polymerase.	0.914
A0A1V6RDX6	A0A1V6S7D3	UmuC domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.903
A0A1V6RDX6	A0A1V6SCE3	UmuC domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.975
A0A1V6RDX6	A0A1V6SG41	UmuC domain-containing protein.	UmuC domain-containing protein.	0.911
A0A1V6RS54	A0A1V6RDX6	BRCT domain-containing protein.	UmuC domain-containing protein.	0.903
A0A1V6RS54	A0A1V6RTT5	BRCT domain-containing protein.	HORMA domain-containing protein.	0.940
A0A1V6RS54	A0A1V6S5N5	BRCT domain-containing protein.	DNA polymerase.	0.938
A0A1V6RS54	A0A1V6SCE3	BRCT domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.909
A0A1V6RS54	A0A1V6SG41	BRCT domain-containing protein.	UmuC domain-containing protein.	0.966
A0A1V6RTI0	A0A1V6RDX6	Zn(2)-C6 fungal-type domain-containing protein.	UmuC domain-containing protein.	0.903
A0A1V6RTI0	A0A1V6RTT5	Zn(2)-C6 fungal-type domain-containing protein.	HORMA domain-containing protein.	0.940
A0A1V6RTI0	A0A1V6S5N5	Zn(2)-C6 fungal-type domain-containing protein.	DNA polymerase.	0.938
A0A1V6RTI0	A0A1V6SCE3	Zn(2)-C6 fungal-type domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.909
A0A1V6RTI0	A0A1V6SG41	Zn(2)-C6 fungal-type domain-containing protein.	UmuC domain-containing protein.	0.966
A0A1V6RTT5	A0A1V6RDX6	HORMA domain-containing protein.	UmuC domain-containing protein.	0.903
A0A1V6RTT5	A0A1V6RS54	HORMA domain-containing protein.	BRCT domain-containing protein.	0.940