5 items (Penicillium vulpinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6RSF6	Uncharacterized protein. (310 aa)
	A0A1V6RSI9	Uncharacterized protein. (446 aa)
	A0A1V6RFZ9	Uncharacterized protein. (184 aa)
	A0A1V6SCG3	Uncharacterized protein. (539 aa)
	A0A1V6RRP0	DNA polymerase. (1104 aa)

Your Current Organism:

Penicillium vulpinum

NCBI taxonomy Id: 29845
Other names: P. vulpinum, Penicillium claviforme

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6RFZ9	A0A1V6RRP0	Uncharacterized protein.	DNA polymerase.	0.893
A0A1V6RFZ9	A0A1V6RSF6	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A1V6RFZ9	A0A1V6RSI9	Uncharacterized protein.	Uncharacterized protein.	0.892
A0A1V6RFZ9	A0A1V6SCG3	Uncharacterized protein.	Uncharacterized protein.	0.883
A0A1V6RRP0	A0A1V6RFZ9	DNA polymerase.	Uncharacterized protein.	0.893
A0A1V6RRP0	A0A1V6RSF6	DNA polymerase.	Uncharacterized protein.	0.839
A0A1V6RRP0	A0A1V6RSI9	DNA polymerase.	Uncharacterized protein.	0.989
A0A1V6RRP0	A0A1V6SCG3	DNA polymerase.	Uncharacterized protein.	0.999
A0A1V6RSF6	A0A1V6RFZ9	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A1V6RSF6	A0A1V6RRP0	Uncharacterized protein.	DNA polymerase.	0.839
A0A1V6RSF6	A0A1V6SCG3	Uncharacterized protein.	Uncharacterized protein.	0.840
A0A1V6RSI9	A0A1V6RFZ9	Uncharacterized protein.	Uncharacterized protein.	0.892
A0A1V6RSI9	A0A1V6RRP0	Uncharacterized protein.	DNA polymerase.	0.989
A0A1V6RSI9	A0A1V6SCG3	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A1V6SCG3	A0A1V6RFZ9	Uncharacterized protein.	Uncharacterized protein.	0.883
A0A1V6SCG3	A0A1V6RRP0	Uncharacterized protein.	DNA polymerase.	0.999
A0A1V6SCG3	A0A1V6RSF6	Uncharacterized protein.	Uncharacterized protein.	0.840
A0A1V6SCG3	A0A1V6RSI9	Uncharacterized protein.	Uncharacterized protein.	0.993