42 items (Penicillium vulpinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6S5G7	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (293 aa)
	A0A1V6S2W3	RPOLD domain-containing protein. (335 aa)
	A0A1V6S278	Acyl_transf_3 domain-containing protein. (457 aa)
	A0A1V6S0V3	RNA_pol_L_2 domain-containing protein. (165 aa)
	A0A1V6RZZ8	Uncharacterized protein. (366 aa)
	A0A1V6RZN1	Uncharacterized protein. (602 aa)
	A0A1V6RYT8	Uncharacterized protein. (362 aa)
	A0A1V6RYK6	Uncharacterized protein. (265 aa)
	A0A1V6RYA7	TAFII55_N domain-containing protein. (475 aa)
	A0A1V6RVW7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1255 aa)
	A0A1V6RVH2	Uncharacterized protein. (74 aa)
	A0A1V6RV89	DUF3591 domain-containing protein. (1113 aa)
	A0A1V6RU19	DUF4211 domain-containing protein. (644 aa)
	A0A1V6RTW3	Uncharacterized protein. (265 aa)
	A0A1V6RSW0	Uncharacterized protein. (314 aa)
	A0A1V6RS72	Uncharacterized protein. (752 aa)
	A0A1V6RN86	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1738 aa)
	A0A1V6RMZ8	Acyl_transf_3 domain-containing protein. (481 aa)
	A0A1V6RMP3	HTH TFE/IIEalpha-type domain-containing protein. (449 aa)
	A0A1V6RML4	RPOL9 domain-containing protein. (137 aa)
	A0A1V6RM77	Uncharacterized protein. (371 aa)
	A0A1V6RIM7	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (697 aa)
	A0A1V6RI24	Uncharacterized protein. (821 aa)
	A0A1V6RFC1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (404 aa)
	A0A1V6R659	Uncharacterized protein. (112 aa)
	A0A1V6R5C5	Helicase ATP-binding domain-containing protein. (795 aa)
	A0A1V6R4U4	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (447 aa)
	A0A1V6R4Q4	Uncharacterized protein. (1245 aa)
	A0A1V6SFW8	Acyl_transf_3 domain-containing protein. (473 aa)
	A0A1V6SEN9	TAFII28 domain-containing protein. (396 aa)
	A0A1V6SED1	TAF domain-containing protein. (442 aa)
	A0A1V6SE12	Uncharacterized protein. (428 aa)
	A0A1V6SCQ3	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (480 aa)
	A0A1V6SCH6	RING-type domain-containing protein. (370 aa)
	A0A1V6SBS6	Uncharacterized protein. (143 aa)
	A0A1V6SAT1	TFIIB-type domain-containing protein. (353 aa)
	A0A1V6S989	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (238 aa)
	A0A1V6S8T6	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
	A0A1V6S7I8	Uncharacterized protein. (77 aa)
	A0A1V6S742	TFIID_20kDa domain-containing protein. (622 aa)
	A0A1V6S5U9	RPOL4c domain-containing protein. (148 aa)
	A0A1V6S5I3	Uncharacterized protein. (636 aa)

Your Current Organism:

Penicillium vulpinum

NCBI taxonomy Id: 29845
Other names: P. vulpinum, Penicillium claviforme

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6R4Q4	A0A1V6R4U4	Uncharacterized protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.859
A0A1V6R4Q4	A0A1V6R5C5	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.866
A0A1V6R4Q4	A0A1V6RFC1	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.859
A0A1V6R4Q4	A0A1V6RI24	Uncharacterized protein.	Uncharacterized protein.	0.873
A0A1V6R4Q4	A0A1V6RIM7	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.962
A0A1V6R4Q4	A0A1V6RM77	Uncharacterized protein.	Uncharacterized protein.	0.886
A0A1V6R4Q4	A0A1V6RML4	Uncharacterized protein.	RPOL9 domain-containing protein.	0.867
A0A1V6R4Q4	A0A1V6RMP3	Uncharacterized protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.887
A0A1V6R4Q4	A0A1V6RMZ8	Uncharacterized protein.	Acyl_transf_3 domain-containing protein.	0.940
A0A1V6R4Q4	A0A1V6RN86	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.887
A0A1V6R4Q4	A0A1V6RS72	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1V6R4Q4	A0A1V6RSW0	Uncharacterized protein.	Uncharacterized protein.	0.890
A0A1V6R4Q4	A0A1V6RTW3	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1V6R4Q4	A0A1V6RU19	Uncharacterized protein.	DUF4211 domain-containing protein.	0.958
A0A1V6R4Q4	A0A1V6RV89	Uncharacterized protein.	DUF3591 domain-containing protein.	0.999
A0A1V6R4Q4	A0A1V6RVH2	Uncharacterized protein.	Uncharacterized protein.	0.868
A0A1V6R4Q4	A0A1V6RVW7	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.920
A0A1V6R4Q4	A0A1V6RYA7	Uncharacterized protein.	TAFII55_N domain-containing protein.	0.999
A0A1V6R4Q4	A0A1V6RYK6	Uncharacterized protein.	Uncharacterized protein.	0.958
A0A1V6R4Q4	A0A1V6RYT8	Uncharacterized protein.	Uncharacterized protein.	0.999