7 items (Penicillium vulpinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6S961	Uncharacterized protein. (480 aa)
	A0A1V6RGN1	Uncharacterized protein. (1300 aa)
	A0A1V6RVA2	Uncharacterized protein. (246 aa)
	A0A1V6RWX1	Uncharacterized protein. (481 aa)
	A0A1V6S380	Uncharacterized protein. (584 aa)
	A0A1V6S6B8	Uncharacterized protein. (2875 aa)
	A0A1V6SBC1	Glycos_transf_1 domain-containing protein. (695 aa)

Your Current Organism:

Penicillium vulpinum

NCBI taxonomy Id: 29845
Other names: P. vulpinum, Penicillium claviforme

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6RVA2	A0A1V6S380	Uncharacterized protein.	Uncharacterized protein.	0.572
A0A1V6RVA2	A0A1V6S961	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A1V6RVA2	A0A1V6SBC1	Uncharacterized protein.	Glycos_transf_1 domain-containing protein.	0.730
A0A1V6S380	A0A1V6RVA2	Uncharacterized protein.	Uncharacterized protein.	0.572
A0A1V6S380	A0A1V6S961	Uncharacterized protein.	Uncharacterized protein.	0.909
A0A1V6S380	A0A1V6SBC1	Uncharacterized protein.	Glycos_transf_1 domain-containing protein.	0.664
A0A1V6S961	A0A1V6RVA2	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A1V6S961	A0A1V6S380	Uncharacterized protein.	Uncharacterized protein.	0.909
A0A1V6SBC1	A0A1V6RVA2	Glycos_transf_1 domain-containing protein.	Uncharacterized protein.	0.730
A0A1V6SBC1	A0A1V6S380	Glycos_transf_1 domain-containing protein.	Uncharacterized protein.	0.664