(16 nodes) Extracellular membrane-bounded organelle network (Frankia sp. EAN1pec)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	dnaK-2	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. (663 aa)
	ABW16329.1	2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: sen:SACE_3103 70 kD heat shock protein (molecular chaperone). (546 aa)
	ABW16000.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: fal:FRAAL5963 hypothetical protein. (333 aa)
	ABW15872.1	PFAM: Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL0631 putative pyridoxal-dependent decarboxylase. (474 aa)
	ABW15082.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: fal:FRAAL1415 putative nitrilase. (279 aa)
	ABW14735.1	PFAM: selenium-binding protein; KEGG: sen:SACE_3282 56kDa selenium binding. (574 aa)
	ABW14148.1	PFAM: thioesterase superfamily protein. (333 aa)
	ABW13193.1	PFAM: Heat shock protein 70; KEGG: stp:Strop_1651 heat shock protein 70. (880 aa)
	ABW13030.1	2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: noc:Noc_0667 heat shock protein HSP70. (832 aa)
	ABW11809.1	Pyridoxal-dependent decarboxylase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL4406 putative amino acid decarboxylase, pyridoxal-dependent protein. (518 aa)
	ABW11625.1	PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: fal:FRAAL1983 putative 3-hydroxybutyryl-CoA dehydrogenase (beta-hydroxybutyryl-CoA dehydrogenase) (BhbD). (303 aa)
	ABW10646.1	2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: fal:FRAAL5750 hypothetical protein; DnaK protein homolog. (628 aa)
	ABW10515.1	2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: fal:FRAAL5893 hypothetical protein; putative DnaK protein-homolog. (580 aa)
	ABW10493.1	PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: fal:FRAAL5917 putative 3-hydroxyacyl-CoA dehydrogenase. (595 aa)
	ABW10120.1	PFAM: Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL6422 putative L-2,4-diaminobutyrate decarboxylase. (484 aa)
	dnaK	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. (612 aa)

Your Current Organism:

Frankia sp. EAN1pec

NCBI taxonomy Id: 298653
Other names: F. sp. EAN1pec

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABW10120.1	ABW10515.1	Franean1_0661	Franean1_1059	PFAM: Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL6422 putative L-2,4-diaminobutyrate decarboxylase.	2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: fal:FRAAL5893 hypothetical protein; putative DnaK protein-homolog.	0.449
ABW10120.1	ABW10646.1	Franean1_0661	Franean1_1192	PFAM: Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL6422 putative L-2,4-diaminobutyrate decarboxylase.	2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: fal:FRAAL5750 hypothetical protein; DnaK protein homolog.	0.449
ABW10120.1	ABW13030.1	Franean1_0661	Franean1_3632	PFAM: Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL6422 putative L-2,4-diaminobutyrate decarboxylase.	2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: noc:Noc_0667 heat shock protein HSP70.	0.449
ABW10120.1	ABW13193.1	Franean1_0661	Franean1_3800	PFAM: Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL6422 putative L-2,4-diaminobutyrate decarboxylase.	PFAM: Heat shock protein 70; KEGG: stp:Strop_1651 heat shock protein 70.	0.449
ABW10120.1	ABW15872.1	Franean1_0661	Franean1_6535	PFAM: Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL6422 putative L-2,4-diaminobutyrate decarboxylase.	PFAM: Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL0631 putative pyridoxal-dependent decarboxylase.	0.927
ABW10120.1	ABW16329.1	Franean1_0661	Franean1_6998	PFAM: Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL6422 putative L-2,4-diaminobutyrate decarboxylase.	2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: sen:SACE_3103 70 kD heat shock protein (molecular chaperone).	0.449
ABW10120.1	dnaK	Franean1_0661	Franean1_0233	PFAM: Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL6422 putative L-2,4-diaminobutyrate decarboxylase.	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.449
ABW10120.1	dnaK-2	Franean1_0661	Franean1_1569	PFAM: Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL6422 putative L-2,4-diaminobutyrate decarboxylase.	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.449
ABW10493.1	ABW11625.1	Franean1_1037	Franean1_2189	PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: fal:FRAAL5917 putative 3-hydroxyacyl-CoA dehydrogenase.	PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: fal:FRAAL1983 putative 3-hydroxybutyryl-CoA dehydrogenase (beta-hydroxybutyryl-CoA dehydrogenase) (BhbD).	0.906
ABW10515.1	ABW10120.1	Franean1_1059	Franean1_0661	2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: fal:FRAAL5893 hypothetical protein; putative DnaK protein-homolog.	PFAM: Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL6422 putative L-2,4-diaminobutyrate decarboxylase.	0.449
ABW10515.1	ABW11809.1	Franean1_1059	Franean1_2377	2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: fal:FRAAL5893 hypothetical protein; putative DnaK protein-homolog.	Pyridoxal-dependent decarboxylase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL4406 putative amino acid decarboxylase, pyridoxal-dependent protein.	0.449
ABW10515.1	ABW15872.1	Franean1_1059	Franean1_6535	2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: fal:FRAAL5893 hypothetical protein; putative DnaK protein-homolog.	PFAM: Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL0631 putative pyridoxal-dependent decarboxylase.	0.449
ABW10646.1	ABW10120.1	Franean1_1192	Franean1_0661	2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: fal:FRAAL5750 hypothetical protein; DnaK protein homolog.	PFAM: Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL6422 putative L-2,4-diaminobutyrate decarboxylase.	0.449
ABW10646.1	ABW11809.1	Franean1_1192	Franean1_2377	2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: fal:FRAAL5750 hypothetical protein; DnaK protein homolog.	Pyridoxal-dependent decarboxylase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL4406 putative amino acid decarboxylase, pyridoxal-dependent protein.	0.449
ABW10646.1	ABW15872.1	Franean1_1192	Franean1_6535	2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: fal:FRAAL5750 hypothetical protein; DnaK protein homolog.	PFAM: Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL0631 putative pyridoxal-dependent decarboxylase.	0.449
ABW11625.1	ABW10493.1	Franean1_2189	Franean1_1037	PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: fal:FRAAL1983 putative 3-hydroxybutyryl-CoA dehydrogenase (beta-hydroxybutyryl-CoA dehydrogenase) (BhbD).	PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: fal:FRAAL5917 putative 3-hydroxyacyl-CoA dehydrogenase.	0.906
ABW11809.1	ABW10515.1	Franean1_2377	Franean1_1059	Pyridoxal-dependent decarboxylase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL4406 putative amino acid decarboxylase, pyridoxal-dependent protein.	2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: fal:FRAAL5893 hypothetical protein; putative DnaK protein-homolog.	0.449
ABW11809.1	ABW10646.1	Franean1_2377	Franean1_1192	Pyridoxal-dependent decarboxylase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL4406 putative amino acid decarboxylase, pyridoxal-dependent protein.	2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: fal:FRAAL5750 hypothetical protein; DnaK protein homolog.	0.449
ABW11809.1	ABW13030.1	Franean1_2377	Franean1_3632	Pyridoxal-dependent decarboxylase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL4406 putative amino acid decarboxylase, pyridoxal-dependent protein.	2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: noc:Noc_0667 heat shock protein HSP70.	0.449
ABW11809.1	ABW13193.1	Franean1_2377	Franean1_3800	Pyridoxal-dependent decarboxylase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; Pyridoxal-dependent decarboxylase; KEGG: fal:FRAAL4406 putative amino acid decarboxylase, pyridoxal-dependent protein.	PFAM: Heat shock protein 70; KEGG: stp:Strop_1651 heat shock protein 70.	0.522