(17 nodes) Synaptic vesicle budding from presynaptic endocytic zone membrane network (Leptotrombidium deliense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B4U80_01735	Dynamin-2-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (129 aa)
	B4U80_03095	Dynamin-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (840 aa)
	B4U80_09108	Phosphatidylinositol-binding clathrin assembly protein LAP-like protein. (391 aa)
	B4U80_09109	Phosphatidylinositol-binding clathrin assembly protein LAP-like protein. (211 aa)
	B4U80_08193	Dynamin-like protein. (408 aa)
	B4U80_06854	Dynamin-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (736 aa)
	B4U80_05740	Dynamin-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (213 aa)
	B4U80_07106	Dynamin-like isoform X10. (207 aa)
	B4U80_07286	Dynamin-1-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (205 aa)
	B4U80_01188	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (220 aa)
	B4U80_06422	Dynamin-2-like protein. (167 aa)
	B4U80_06423	Dynamin-1-like isoform X14. (297 aa)
	B4U80_02989	Dynamin-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (640 aa)
	B4U80_02111	Dynamin-1-like protein. (284 aa)
	B4U80_08439	Dynamin-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (582 aa)
	B4U80_08567	Dynamin-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (310 aa)
	B4U80_03648	Dynamin-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (183 aa)

Your Current Organism:

Leptotrombidium deliense

NCBI taxonomy Id: 299467
Other names: L. deliense, scrub typhus mite

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B4U80_01188	B4U80_07106	A0A443S0A1	A0A443RTS7	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Dynamin-like isoform X10.	0.832
B4U80_01188	B4U80_07286	A0A443S0A1	A0A443RVJ9	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Dynamin-1-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.657
B4U80_01188	B4U80_08193	A0A443S0A1	A0A443SM06	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Dynamin-like protein.	0.655
B4U80_01188	B4U80_09108	A0A443S0A1	A0A443SQ00	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Phosphatidylinositol-binding clathrin assembly protein LAP-like protein.	0.418
B4U80_01188	B4U80_09109	A0A443S0A1	A0A443SPZ2	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Phosphatidylinositol-binding clathrin assembly protein LAP-like protein.	0.418
B4U80_01735	B4U80_07106	A0A443RY69	A0A443RTS7	Dynamin-2-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Dynamin-like isoform X10.	0.822
B4U80_01735	B4U80_07286	A0A443RY69	A0A443RVJ9	Dynamin-2-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Dynamin-1-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.914
B4U80_01735	B4U80_09108	A0A443RY69	A0A443SQ00	Dynamin-2-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Phosphatidylinositol-binding clathrin assembly protein LAP-like protein.	0.418
B4U80_01735	B4U80_09109	A0A443RY69	A0A443SPZ2	Dynamin-2-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Phosphatidylinositol-binding clathrin assembly protein LAP-like protein.	0.418
B4U80_02111	B4U80_09108	A0A443S5R5	A0A443SQ00	Dynamin-1-like protein.	Phosphatidylinositol-binding clathrin assembly protein LAP-like protein.	0.418
B4U80_02111	B4U80_09109	A0A443S5R5	A0A443SPZ2	Dynamin-1-like protein.	Phosphatidylinositol-binding clathrin assembly protein LAP-like protein.	0.418
B4U80_02989	B4U80_09108	A0A443S4K5	A0A443SQ00	Dynamin-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Phosphatidylinositol-binding clathrin assembly protein LAP-like protein.	0.418
B4U80_02989	B4U80_09109	A0A443S4K5	A0A443SPZ2	Dynamin-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Phosphatidylinositol-binding clathrin assembly protein LAP-like protein.	0.418
B4U80_03095	B4U80_09108	A0A443STJ6	A0A443SQ00	Dynamin-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Phosphatidylinositol-binding clathrin assembly protein LAP-like protein.	0.418
B4U80_03095	B4U80_09109	A0A443STJ6	A0A443SPZ2	Dynamin-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Phosphatidylinositol-binding clathrin assembly protein LAP-like protein.	0.418
B4U80_03648	B4U80_07106	A0A443SDD9	A0A443RTS7	Dynamin-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Dynamin-like isoform X10.	0.867
B4U80_03648	B4U80_07286	A0A443SDD9	A0A443RVJ9	Dynamin-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Dynamin-1-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.921
B4U80_03648	B4U80_08193	A0A443SDD9	A0A443SM06	Dynamin-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Dynamin-like protein.	0.722
B4U80_03648	B4U80_09108	A0A443SDD9	A0A443SQ00	Dynamin-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Phosphatidylinositol-binding clathrin assembly protein LAP-like protein.	0.418
B4U80_03648	B4U80_09109	A0A443SDD9	A0A443SPZ2	Dynamin-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Phosphatidylinositol-binding clathrin assembly protein LAP-like protein.	0.418