(31 nodes) Ribosomal large subunit biogenesis, and Reticulon-4-interacting protein 1 network (Temnothorax longispinosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DBV15_05372	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (613 aa)
	DBV15_00999	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (1486 aa)
	DBV15_03887	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	DBV15_09049	RNA helicase. (1496 aa)
	DBV15_09825	RNA-binding protein 34. (670 aa)
	DBV15_02195	Nucleolar complex protein 2-like protein. (696 aa)
	DBV15_02381	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (774 aa)
	DBV15_03671	WD repeat-containing protein 74. (332 aa)
	DBV15_04068	Uncharacterized protein. (410 aa)
	DBV15_04113	Uncharacterized protein. (313 aa)
	DBV15_00055	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (851 aa)
	DBV15_09008	Putative ATP-dependent RNA helicase DDX27. (1358 aa)
	DBV15_08293	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (914 aa)
	DBV15_06411	CPL domain-containing protein. (610 aa)
	DBV15_04257	Brix domain-containing protein. (348 aa)
	DBV15_08302	Ribosomal_L28e domain-containing protein. (655 aa)
	DBV15_07301	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (605 aa)
	DBV15_11042	Putative ribosomal RNA methyltransferase NOP2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (835 aa)
	DBV15_06438	MKI67 FHA domain-interacting nucleolar phosphoprotein-like protein. (238 aa)
	DBV15_11719	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (456 aa)
	DBV15_01729	Ribosome biogenesis WDR12-like protein. (314 aa)
	DBV15_03506	Uncharacterized protein. (259 aa)
	DBV15_09943	Ribosome production factor 2-like protein. (314 aa)
	DBV15_00291	Ribosomal RNA processing protein 1-like protein B. (1086 aa)
	DBV15_06251	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (465 aa)
	DBV15_05601	RNA helicase. (1753 aa)
	DBV15_11346	ATP-dependent RNA helicase DDX24. (755 aa)
	DBV15_01671	Putative ribosome biogenesis protein RLP24. (202 aa)
	DBV15_09630	Guanine nucleotide-binding-like protein 3. (568 aa)
	DBV15_00741	Brix domain-containing protein. (339 aa)
	DBV15_06793	Uncharacterized protein. (110 aa)

Your Current Organism:

Temnothorax longispinosus

NCBI taxonomy Id: 300112
Other names: Leptothorax longispinosus, T. longispinosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DBV15_00055	DBV15_00291	A0A4S2KDF6	A0A4S2KV82	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Ribosomal RNA processing protein 1-like protein B.	0.971
DBV15_00055	DBV15_00741	A0A4S2KDF6	A0A4V3SB01	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Brix domain-containing protein.	0.984
DBV15_00055	DBV15_00999	A0A4S2KDF6	A0A4S2JGA8	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.995
DBV15_00055	DBV15_01671	A0A4S2KDF6	A0A4S2L6A9	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Putative ribosome biogenesis protein RLP24.	0.995
DBV15_00055	DBV15_01729	A0A4S2KDF6	A0A4S2KRS8	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Ribosome biogenesis WDR12-like protein.	0.992
DBV15_00055	DBV15_02195	A0A4S2KDF6	A0A4S2JT05	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Nucleolar complex protein 2-like protein.	0.994
DBV15_00055	DBV15_02381	A0A4S2KDF6	A0A4S2JXQ5	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily.	0.964
DBV15_00055	DBV15_03506	A0A4S2KDF6	A0A4S2KUH9	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Uncharacterized protein.	0.991
DBV15_00055	DBV15_03671	A0A4S2KDF6	A0A4S2KAP0	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	WD repeat-containing protein 74.	0.994
DBV15_00055	DBV15_03887	A0A4S2KDF6	A0A4S2JNN0	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.970
DBV15_00055	DBV15_04068	A0A4S2KDF6	A0A4S2KBH1	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Uncharacterized protein.	0.992
DBV15_00055	DBV15_04113	A0A4S2KDF6	A0A4S2KCZ0	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Uncharacterized protein.	0.995
DBV15_00055	DBV15_04257	A0A4S2KDF6	A0A4S2KL88	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Brix domain-containing protein.	0.965
DBV15_00055	DBV15_05372	A0A4S2KDF6	A0A4S2JFH5	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.994
DBV15_00055	DBV15_05601	A0A4S2KDF6	A0A4S2KWN2	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	RNA helicase.	0.987
DBV15_00055	DBV15_06251	A0A4S2KDF6	A0A4S2KVX9	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.987
DBV15_00055	DBV15_06411	A0A4S2KDF6	A0A4S2KHQ7	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	CPL domain-containing protein.	0.949
DBV15_00055	DBV15_06438	A0A4S2KDF6	A0A4S2KNI4	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	MKI67 FHA domain-interacting nucleolar phosphoprotein-like protein.	0.996
DBV15_00055	DBV15_06793	A0A4S2KDF6	A0A4V3SC03	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Uncharacterized protein.	0.922
DBV15_00055	DBV15_07301	A0A4S2KDF6	A0A4S2KMG1	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.994