(29 nodes) Ribosome assembly network (Temnothorax longispinosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DBV15_04973	Mpv17-like protein 2; Belongs to the peroxisomal membrane protein PXMP2/4 family. (205 aa)
	DBV15_09553	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family. (218 aa)
	DBV15_07936	X-ray repair cross-complementing protein 5. (740 aa)
	DBV15_10725	Uncharacterized protein. (240 aa)
	DBV15_01523	Ribosomal RNA-processing protein 7-like protein A. (252 aa)
	DBV15_11260	Complement component 1 Q subcomponent-binding protein, mitochondrial. (125 aa)
	DBV15_09943	Ribosome production factor 2-like protein. (314 aa)
	DBV15_00334	Elongation factor Tu GTP-binding domain-containing protein 1. (1435 aa)
	DBV15_00361	Periodic tryptophan protein 2-like protein. (1241 aa)
	DBV15_03517	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (147 aa)
	DBV15_02424	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (246 aa)
	DBV15_10582	40S ribosomal protein S27. (85 aa)
	DBV15_05312	Uncharacterized protein. (2029 aa)
	DBV15_05778	28S ribosomal protein S7, mitochondrial. (234 aa)
	DBV15_05916	Uncharacterized protein. (605 aa)
	DBV15_11237	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (292 aa)
	DBV15_03887	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	DBV15_02939	Ribosomal rna methyltransferase. (246 aa)
	DBV15_02396	Ribosome maturation protein SBDS. (253 aa)
	DBV15_07832	40s ribosomal protein s5. (315 aa)
	DBV15_12120	Uncharacterized protein. (214 aa)
	DBV15_07056	Uncharacterized protein. (542 aa)
	DBV15_10706	Brix domain-containing protein. (427 aa)
	DBV15_04257	Brix domain-containing protein. (348 aa)
	DBV15_05226	mTERF domain-containing protein 1, mitochondrial. (422 aa)
	DBV15_06942	60S ribosomal protein L10. (239 aa)
	DBV15_06439	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (5472 aa)
	DBV15_11719	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (456 aa)
	DBV15_11355	Complement component 1 Q subcomponent-binding protein, mitochondrial. (458 aa)

Your Current Organism:

Temnothorax longispinosus

NCBI taxonomy Id: 300112
Other names: Leptothorax longispinosus, T. longispinosus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DBV15_00334	DBV15_02396	A0A4S2KVN9	A0A4S2JWN6	Elongation factor Tu GTP-binding domain-containing protein 1.	Ribosome maturation protein SBDS.	0.978
DBV15_00334	DBV15_02424	A0A4S2KVN9	A0A4S2L175	Elongation factor Tu GTP-binding domain-containing protein 1.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.976
DBV15_00334	DBV15_03517	A0A4S2KVN9	A0A4S2KZI1	Elongation factor Tu GTP-binding domain-containing protein 1.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.971
DBV15_00334	DBV15_05778	A0A4S2KVN9	A0A4S2L3N8	Elongation factor Tu GTP-binding domain-containing protein 1.	28S ribosomal protein S7, mitochondrial.	0.878
DBV15_00334	DBV15_06942	A0A4S2KVN9	A0A4S2KMI3	Elongation factor Tu GTP-binding domain-containing protein 1.	60S ribosomal protein L10.	0.866
DBV15_00334	DBV15_07056	A0A4S2KVN9	A0A4S2KGE9	Elongation factor Tu GTP-binding domain-containing protein 1.	Uncharacterized protein.	0.633
DBV15_00334	DBV15_07832	A0A4S2KVN9	A0A4S2K548	Elongation factor Tu GTP-binding domain-containing protein 1.	40s ribosomal protein s5.	0.878
DBV15_00334	DBV15_10582	A0A4S2KVN9	A0A4S2L2L5	Elongation factor Tu GTP-binding domain-containing protein 1.	40S ribosomal protein S27.	0.870
DBV15_00334	DBV15_11237	A0A4S2KVN9	A0A4V3SB44	Elongation factor Tu GTP-binding domain-containing protein 1.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.777
DBV15_00334	DBV15_12120	A0A4S2KVN9	A0A4S2K6H1	Elongation factor Tu GTP-binding domain-containing protein 1.	Uncharacterized protein.	0.878
DBV15_00361	DBV15_01523	A0A4S2KVX3	A0A4S2KTT9	Periodic tryptophan protein 2-like protein.	Ribosomal RNA-processing protein 7-like protein A.	0.998
DBV15_00361	DBV15_02424	A0A4S2KVX3	A0A4S2L175	Periodic tryptophan protein 2-like protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.919
DBV15_00361	DBV15_02939	A0A4S2KVX3	A0A4S2JQE7	Periodic tryptophan protein 2-like protein.	Ribosomal rna methyltransferase.	0.680
DBV15_00361	DBV15_03887	A0A4S2KVX3	A0A4S2JNN0	Periodic tryptophan protein 2-like protein.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.951
DBV15_00361	DBV15_04257	A0A4S2KVX3	A0A4S2KL88	Periodic tryptophan protein 2-like protein.	Brix domain-containing protein.	0.853
DBV15_00361	DBV15_05312	A0A4S2KVX3	A0A4S2L380	Periodic tryptophan protein 2-like protein.	Uncharacterized protein.	0.883
DBV15_00361	DBV15_05778	A0A4S2KVX3	A0A4S2L3N8	Periodic tryptophan protein 2-like protein.	28S ribosomal protein S7, mitochondrial.	0.937
DBV15_00361	DBV15_06439	A0A4S2KVX3	A0A4S2KNK3	Periodic tryptophan protein 2-like protein.	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	0.503
DBV15_00361	DBV15_07056	A0A4S2KVX3	A0A4S2KGE9	Periodic tryptophan protein 2-like protein.	Uncharacterized protein.	0.703
DBV15_00361	DBV15_07832	A0A4S2KVX3	A0A4S2K548	Periodic tryptophan protein 2-like protein.	40s ribosomal protein s5.	0.937