47 items (Drosophila busckii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0M4F6I1	Polybromo. (1644 aa)
	Dbus_chr2Lg58	CG31917. (151 aa)
	Dbus_chr2Rg258	D4. (537 aa)
	A0A0M3QVH5	CG18004. (285 aa)
	Dbus_chr3Rg949	CG11873. (1347 aa)
	A0A0M3QXX8	Snr1. (370 aa)
	A0A0M3QY13	MBD-like. (196 aa)
	A0A0M3QY24	Mor. (1196 aa)
	A0A0M3QY47	Ino80. (1624 aa)
	A0A0M3QY59	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. (456 aa)
	A0A0M3QY73	CG11970. (1523 aa)
	Dbus_chrXg1665	Chrac-16. (134 aa)
	Dbus_chr3Lg532	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (529 aa)
	A0A0M4E8W2	CG7154. (900 aa)
	A0A0M4EA99	CG32202. (115 aa)
	Dbus_chr3Lg200	Rcd5. (548 aa)
	A0A0M4ECF6	CG33695. (306 aa)
	Dbus_chr2Rg994	DMAP1. (433 aa)
	A0A0M4ECU4	Dom. (3526 aa)
	Dbus_chr2Rg680	Tou. (3465 aa)
	Dbus_chr3Lg131	E-bx. (2865 aa)
	Dbus_chr2Rg664	Bap55; Belongs to the actin family. (427 aa)
	Dbus_chr2Rg864	CG13203. (548 aa)
	A0A0M4EHL5	Iswi. (1594 aa)
	A0A0M4EIN9	Bap170. (1565 aa)
	Dbus_chrXg1184	Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (607 aa)
	A0A0M4EMZ1	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. (479 aa)
	A0A0M4EP62	Acf1. (1463 aa)
	A0A0M4EPX4	Chrac-14. (133 aa)
	A0A0M4EQ03	Etl1. (517 aa)
	A0A0M4EQK1	CG4751. (1414 aa)
	Dbus_chrXg283	Actr13E; Belongs to the actin family. (401 aa)
	A0A0M4EQY9	Brm. (1671 aa)
	A0A0M4ERF0	Caf1. (430 aa)
	Dbus_chr4g35	Pho. (543 aa)
	Dbus_chr3Rg817	CG6026. (1287 aa)
	Dbus_chrXg882	E-y-3. (1578 aa)
	Dbus_chr2Rg336	Nurf-38. (338 aa)
	Dbus_chrXg1644	Tth. (414 aa)
	Dbus_chrXg1744	Dalao. (660 aa)
	A0A0M4EVQ0	CtBP; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (498 aa)
	A0A0M4F456	Arp5; Belongs to the actin family. (651 aa)
	Dbus_chrXg624	Bap60. (505 aa)
	Dbus_chr2Lg866	CG8677. (2799 aa)
	A0A0M5J5D8	MTA1-like. (831 aa)
	Dbus_chr3Lg722	Simj. (905 aa)
	A0A0M5JCH6	Osa. (2254 aa)

Your Current Organism:

Drosophila busckii

NCBI taxonomy Id: 30019
Other names: D. busckii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0M3QVH5	A0A0M3QY47	A0A0M3QVH5	A0A0M3QY47	CG18004.	Ino80.	0.709
A0A0M3QVH5	A0A0M3QY59	A0A0M3QVH5	A0A0M3QY59	CG18004.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.	0.879
A0A0M3QVH5	A0A0M3QY73	A0A0M3QVH5	A0A0M3QY73	CG18004.	CG11970.	0.940
A0A0M3QVH5	A0A0M4EA99	A0A0M3QVH5	A0A0M4EA99	CG18004.	CG32202.	0.878
A0A0M3QVH5	A0A0M4ECU4	A0A0M3QVH5	A0A0M4ECU4	CG18004.	Dom.	0.850
A0A0M3QVH5	A0A0M4EMZ1	A0A0M3QVH5	A0A0M4EMZ1	CG18004.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.	0.543
A0A0M3QVH5	A0A0M4EQ03	A0A0M3QVH5	A0A0M4EQ03	CG18004.	Etl1.	0.709
A0A0M3QVH5	A0A0M4F456	A0A0M3QVH5	A0A0M4F456	CG18004.	Arp5; Belongs to the actin family.	0.918
A0A0M3QVH5	Dbus_chr2Rg664	A0A0M3QVH5	A0A0M4EFQ1	CG18004.	Bap55; Belongs to the actin family.	0.801
A0A0M3QVH5	Dbus_chr3Lg200	A0A0M3QVH5	A0A0M4ECB3	CG18004.	Rcd5.	0.937
A0A0M3QVH5	Dbus_chr4g35	A0A0M3QVH5	A0A0M4ET97	CG18004.	Pho.	0.674
A0A0M3QVH5	Dbus_chrXg1184	A0A0M3QVH5	A0A0M4EJJ4	CG18004.	Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily.	0.894
A0A0M3QXX8	A0A0M3QY24	A0A0M3QXX8	A0A0M3QY24	Snr1.	Mor.	0.998
A0A0M3QXX8	A0A0M4E8W2	A0A0M3QXX8	A0A0M4E8W2	Snr1.	CG7154.	0.992
A0A0M3QXX8	A0A0M4EHL5	A0A0M3QXX8	A0A0M4EHL5	Snr1.	Iswi.	0.494
A0A0M3QXX8	A0A0M4EIN9	A0A0M3QXX8	A0A0M4EIN9	Snr1.	Bap170.	0.994
A0A0M3QXX8	A0A0M4EQY9	A0A0M3QXX8	A0A0M4EQY9	Snr1.	Brm.	0.997
A0A0M3QXX8	A0A0M4ERF0	A0A0M3QXX8	A0A0M4ERF0	Snr1.	Caf1.	0.559
A0A0M3QXX8	A0A0M4F6I1	A0A0M3QXX8	A0A0M4F6I1	Snr1.	Polybromo.	0.996
A0A0M3QXX8	A0A0M5JCH6	A0A0M3QXX8	A0A0M5JCH6	Snr1.	Osa.	0.993