115 items (Drosophila busckii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Dbus_chrXg605	RpS14a; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	A0A0M4ES12	CG1542. (307 aa)
	A0A0M4ERC6	Ns1. (580 aa)
	A0A0M4ER74	Spdo. (542 aa)
	A0A0M4EQU4	CG12301. (754 aa)
	A0A0M4EV80	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (208 aa)
	A0A0M4EQU0	CG9253; Belongs to the DEAD box helicase family. (521 aa)
	A0A0M4EQL9	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)
	A0A0M4EQ58	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (106 aa)
	Dbus_chr2Lg767	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (439 aa)
	A0A0M4EP54	Mod. (552 aa)
	Dbus_chrXg1640	CG7246. (607 aa)
	Dbus_chr2Lg485	Ski6. (249 aa)
	Dbus_chr2Lg360	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (654 aa)
	Dbus_chr2Lg322	RpL37A. (46 aa)
	A0A0M4ENI9	CG16953. (552 aa)
	Dbus_chr2Lg17	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (341 aa)
	A0A0M4E9X1	Rrp40. (232 aa)
	Dbus_chrXg864	RpS15Aa; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	A0A0M4ELL5	Rrp4. (298 aa)
	A0A0M4ELA9	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (772 aa)
	Dbus_chrXg1566	Rrp47. (156 aa)
	Dbus_chrXg411	Rtc1. (381 aa)
	Dbus_chr3Lg586	Vito. (242 aa)
	Dbus_chrXg1086	CG14818. (115 aa)
	A0A0M4EZ55	CG16940; Belongs to the RNR ribonuclease family. (893 aa)
	A0A0M4EZJ0	Rrp45. (314 aa)
	A0A0M4EZS7	L-3-72Dn. (656 aa)
	A0A0M4F108	CG6833. (232 aa)
	A0A0M4F1M2	CG10732. (1602 aa)
	Dbus_chr3Rg650	Nucleolar protein 6. (1147 aa)
	Dbus_chr3Rg482	RpS5b; Belongs to the universal ribosomal protein uS7 family. (239 aa)
	A0A0M4F6A7	CG10903. (296 aa)
	Dbus_chrXg413	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (474 aa)
	Dbus_chrXg513	CG2260. (599 aa)
	Dbus_chrXg1281	CG2875. (511 aa)
	Dbus_chrXg1801	Kz. (1188 aa)
	Dbus_chrXg1863	CG32110. (858 aa)
	Dbus_chr2Rg410	CG4806. (666 aa)
	A0A0M5IY51	CG4554. (2771 aa)
	A0A0M5IYR0	CG7275. (445 aa)
	Dbus_chr3Rg971	CG9799. (925 aa)
	A0A0M4EI65	L-3-07882. (856 aa)
	A0A0M4EI70	CG1671. (795 aa)
	A0A0M4EIN7	Mtr3. (317 aa)
	A0A0M4E9D8	Wcd. (457 aa)
	Dbus_chr2Lg536	KH1. (515 aa)
	Dbus_chr2Lg173	Maker393. (791 aa)
	Dbus_chr2Lg23	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (587 aa)
	Dbus_chr2Lg412	RpS2; Belongs to the universal ribosomal protein uS5 family. (268 aa)
	Dbus_chr2Rg720	Dbp45A; Belongs to the DEAD box helicase family. (517 aa)
	Dbus_chr2Lg731	Nop5. (513 aa)
	A0A0M4E2K7	RpS13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	A0A0M4E1U5	Mpp6. (148 aa)
	Dbus_chr2Lg951	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (143 aa)
	Dbus_chrXg549	CG4061. (360 aa)
	Dbus_chrXg475	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (217 aa)
	Dbus_chrXg19	CG33082. (173 aa)
	A0A0M3QYM9	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	A0A0M3QYJ0	CG11859. (538 aa)
	A0A0M3QYG8	CG8461. (246 aa)
	A0A0M3QYA5	CG5728. (1377 aa)
	A0A0M3QXX4	CG8064. (922 aa)
	Dbus_chr3Rg489	40S ribosomal protein S27. (74 aa)
	A0A0M3QX10	CG11660. (576 aa)
	A0A0M3QWY2	CG7728. (1150 aa)
	A0A0M3QWL4	RpS11. (146 aa)
	A0A0M3QWL2	CG10681. (257 aa)
	Dbus_chr3Lg689	CG18178. (307 aa)
	Dbus_chr2Rg772	Snp. (681 aa)
	Dbus_chr2Rg648	CG4866. (181 aa)
	A0A0M3QUB8	CG12050. (1080 aa)
	A0A0M3QTW6	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (341 aa)
	A0A0M3QTK5	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (635 aa)
	Dbus_chr2Lg884	CG11030. (332 aa)
	Dbus_chr2Lg738	L-2-k09022. (2079 aa)
	Dbus_chr2Lg628	Rpp30. (290 aa)
	A0A0M4EA21	RpS9; Belongs to the universal ribosomal protein uS4 family. (195 aa)
	A0A0M4EAD5	CG7338. (807 aa)
	Dbus_chr2Rg244	CG7686. (485 aa)
	Dbus_chr2Lg857	CG9107. (253 aa)
	Dbus_chr2Rg781	RpS16; Belongs to the universal ribosomal protein uS9 family. (148 aa)
	A0A0M4ECF2	Csl4. (209 aa)
	A0A0M4EDM1	Nnp-1. (671 aa)
	A0A0M4EED7	Rrp6. (890 aa)
	A0A0M4EEP2	CG32075. (570 aa)
	A0A0M4EEZ7	U3-55K. (477 aa)
	Dbus_chr2Rg876	CG8414. (699 aa)
	A0A0M4EH46	RpS11; Belongs to the universal ribosomal protein uS17 family. (196 aa)
	A0A0M4EHR1	CG9422. (191 aa)
	Dbus_chr2Rg221	CG30349. (698 aa)
	A0A0M4EKW2	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (818 aa)
	Dbus_chrXg1497	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (235 aa)
	Dbus_chrXg1384	CG3071. (541 aa)
	Dbus_chr3Rg674	CG10909. (284 aa)
	A0A0M5J0A4	Fib. (339 aa)
	Dbus_chrXg842	CG3527. (252 aa)
	Dbus_chr2Lg716	L-2-35Df. (1064 aa)
	A0A0M5J451	RpS15Aa; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	Dbus_chrXg512	CG1575. (658 aa)
	A0A0M5J6P2	CG12050. (1080 aa)
	Dbus_chr3Rg161	CG33217. (572 aa)
	Dbus_chr2Rg247	CG12325. (941 aa)
	Dbus_chr2Rg885	Rrp42. (315 aa)
	RpS3A	40S ribosomal protein S3a; Essential for oogenesis; required for late follicle cell development. (268 aa)
	Dbus_chrXg1204	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (828 aa)
	Dbus_chr3Lg410	CG43295. (109 aa)
	A0A0M5JB23	CG5589; Belongs to the DEAD box helicase family. (596 aa)
	A0A0M5JD18	Rrp46. (239 aa)
	Dbus_chrXg150	RpS5b; Belongs to the universal ribosomal protein uS7 family. (225 aa)
	Dbus_chrXg474	Bys. (440 aa)
	Dbus_chrXg1087	CG14805. (361 aa)
	A0A0M4EUG8	RpL34b. (158 aa)
	Dbus_chrXg216	Sas10. (434 aa)
	A0A0M4ES87	Nop56. (500 aa)

Your Current Organism:

Drosophila busckii

NCBI taxonomy Id: 30019
Other names: D. busckii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0M3QTK5	A0A0M3QTW6	A0A0M3QTK5	A0A0M3QTW6	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.844
A0A0M3QTK5	A0A0M3QUB8	A0A0M3QTK5	A0A0M3QUB8	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	CG12050.	0.623
A0A0M3QTK5	A0A0M3QWY2	A0A0M3QTK5	A0A0M3QWY2	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	CG7728.	0.911
A0A0M3QTK5	A0A0M3QXX4	A0A0M3QTK5	A0A0M3QXX4	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	CG8064.	0.880
A0A0M3QTK5	A0A0M3QYA5	A0A0M3QTK5	A0A0M3QYA5	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	CG5728.	0.943
A0A0M3QTK5	A0A0M3QYG8	A0A0M3QTK5	A0A0M3QYG8	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	CG8461.	0.676
A0A0M3QTK5	A0A0M3QYJ0	A0A0M3QTK5	A0A0M3QYJ0	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	CG11859.	0.438
A0A0M3QTK5	A0A0M3QYM9	A0A0M3QTK5	A0A0M3QYM9	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.989
A0A0M3QTK5	A0A0M4E9D8	A0A0M3QTK5	A0A0M4E9D8	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Wcd.	0.701
A0A0M3QTK5	A0A0M4EAD5	A0A0M3QTK5	A0A0M4EAD5	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	CG7338.	0.939
A0A0M3QTK5	A0A0M4EDM1	A0A0M3QTK5	A0A0M4EDM1	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Nnp-1.	0.987
A0A0M3QTK5	A0A0M4EED7	A0A0M3QTK5	A0A0M4EED7	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Rrp6.	0.917
A0A0M3QTK5	A0A0M4EEP2	A0A0M3QTK5	A0A0M4EEP2	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	CG32075.	0.826
A0A0M3QTK5	A0A0M4EEZ7	A0A0M3QTK5	A0A0M4EEZ7	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	U3-55K.	0.861
A0A0M3QTK5	A0A0M4EI65	A0A0M3QTK5	A0A0M4EI65	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	L-3-07882.	0.926
A0A0M3QTK5	A0A0M4EI70	A0A0M3QTK5	A0A0M4EI70	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	CG1671.	0.906
A0A0M3QTK5	A0A0M4ELA9	A0A0M3QTK5	A0A0M4ELA9	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.999
A0A0M3QTK5	A0A0M4ELL5	A0A0M3QTK5	A0A0M4ELL5	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Rrp4.	0.442
A0A0M3QTK5	A0A0M4ENI9	A0A0M3QTK5	A0A0M4ENI9	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	CG16953.	0.682
A0A0M3QTK5	A0A0M4EQ58	A0A0M3QTK5	A0A0M4EQ58	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.797