5 items (Shigella dysenteriae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	lpp	Murein lipoprotein; Code: M; COG: COG4238. (78 aa)
	ycfW	Putative kinase; Code: M; COG: COG4591. (414 aa)
	ycfV	Putative ATP-binding component of a transport system; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner. (228 aa)
	ycfU	Conserved hypothetical protein; Code: M; COG: COG4591; orf. (399 aa)
	lolA	Periplasmic protein effects translocation of lipoproteins from inner membrane to outer; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). (204 aa)

Your Current Organism:

Shigella dysenteriae

NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
lolA	lpp	SDY_2370	SDY_1908	Periplasmic protein effects translocation of lipoproteins from inner membrane to outer; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Murein lipoprotein; Code: M; COG: COG4238.	0.838
lolA	ycfU	SDY_2370	SDY_2034	Periplasmic protein effects translocation of lipoproteins from inner membrane to outer; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Conserved hypothetical protein; Code: M; COG: COG4591; orf.	0.956
lolA	ycfV	SDY_2370	SDY_2033	Periplasmic protein effects translocation of lipoproteins from inner membrane to outer; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Putative ATP-binding component of a transport system; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.	0.925
lolA	ycfW	SDY_2370	SDY_2032	Periplasmic protein effects translocation of lipoproteins from inner membrane to outer; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	Putative kinase; Code: M; COG: COG4591.	0.946
lpp	lolA	SDY_1908	SDY_2370	Murein lipoprotein; Code: M; COG: COG4238.	Periplasmic protein effects translocation of lipoproteins from inner membrane to outer; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.838
lpp	ycfU	SDY_1908	SDY_2034	Murein lipoprotein; Code: M; COG: COG4238.	Conserved hypothetical protein; Code: M; COG: COG4591; orf.	0.578
ycfU	lolA	SDY_2034	SDY_2370	Conserved hypothetical protein; Code: M; COG: COG4591; orf.	Periplasmic protein effects translocation of lipoproteins from inner membrane to outer; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.956
ycfU	lpp	SDY_2034	SDY_1908	Conserved hypothetical protein; Code: M; COG: COG4591; orf.	Murein lipoprotein; Code: M; COG: COG4238.	0.578
ycfU	ycfV	SDY_2034	SDY_2033	Conserved hypothetical protein; Code: M; COG: COG4591; orf.	Putative ATP-binding component of a transport system; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.	0.998
ycfU	ycfW	SDY_2034	SDY_2032	Conserved hypothetical protein; Code: M; COG: COG4591; orf.	Putative kinase; Code: M; COG: COG4591.	0.998
ycfV	lolA	SDY_2033	SDY_2370	Putative ATP-binding component of a transport system; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.	Periplasmic protein effects translocation of lipoproteins from inner membrane to outer; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.925
ycfV	ycfU	SDY_2033	SDY_2034	Putative ATP-binding component of a transport system; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.	Conserved hypothetical protein; Code: M; COG: COG4591; orf.	0.998
ycfV	ycfW	SDY_2033	SDY_2032	Putative ATP-binding component of a transport system; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.	Putative kinase; Code: M; COG: COG4591.	0.995
ycfW	lolA	SDY_2032	SDY_2370	Putative kinase; Code: M; COG: COG4591.	Periplasmic protein effects translocation of lipoproteins from inner membrane to outer; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.946
ycfW	ycfU	SDY_2032	SDY_2034	Putative kinase; Code: M; COG: COG4591.	Conserved hypothetical protein; Code: M; COG: COG4591; orf.	0.998
ycfW	ycfV	SDY_2032	SDY_2033	Putative kinase; Code: M; COG: COG4591.	Putative ATP-binding component of a transport system; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.	0.995