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rpmF rpmF rplS rplS rpsP rpsP rpsO rpsO rpmA rpmA rplU rplU rpsI rpsI rplM rplM rplQ rplQ rpmG rpmG rpmB rpmB rpsF rpsF rpsR rpsR rplI rplI
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpmF50S ribosomal subunit protein L32; Code: J; COG: COG0333; Belongs to the bacterial ribosomal protein bL32 family. (57 aa)
rplS50S ribosomal subunit protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (115 aa)
rpsP30S ribosomal subunit protein S16; Code: J; COG: COG0228; Belongs to the bacterial ribosomal protein bS16 family. (82 aa)
rpsO30S ribosomal subunit protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. (89 aa)
rpmA50S ribosomal subunit protein L27; Code: J; COG: COG0211; Belongs to the bacterial ribosomal protein bL27 family. (85 aa)
rplU50S ribosomal subunit protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa)
rpsI30S ribosomal subunit protein S9; Code: J; COG: COG0103; Belongs to the universal ribosomal protein uS9 family. (130 aa)
rplM50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (142 aa)
rplQ50S ribosomal subunit protein L17; Code: J; COG: COG0203. (127 aa)
rpmG50S ribosomal subunit protein L33; Code: J; COG: COG0267; Belongs to the bacterial ribosomal protein bL33 family. (55 aa)
rpmB50S ribosomal subunit protein L28; Code: J; COG: COG0227; Belongs to the bacterial ribosomal protein bL28 family. (78 aa)
rpsF30S ribosomal subunit protein S6; Binds together with S18 to 16S ribosomal RNA. (131 aa)
rpsR30S ribosomal subunit protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (75 aa)
rplI50S ribosomal subunit protein L9; Binds to the 23S rRNA. (149 aa)
Your Current Organism:
Shigella dysenteriae
NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197
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