STRINGSTRING
trpL trpL yciV yciV yciO yciO insA-45 insA-45 insB-42 insB-42 SDY_1338 SDY_1338
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
trpLTrp operon leader peptide. (14 aa)
yciVPutative enzymes; Code: R; COG: COG0613. (293 aa)
yciOConserved hypothetical protein; Code: J; COG: COG0009; orf; Belongs to the SUA5 family. (218 aa)
insA-45IS1 ORF1; Code: L; COG: COG3677. (91 aa)
insB-42IS1 ORF2; Code: L; COG: COG1662. (125 aa)
SDY_1338Hypothetical protein. (141 aa)
Your Current Organism:
Shigella dysenteriae
NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197
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