6 items (Shigella dysenteriae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	yaeB	Conserved hypothetical protein; Code: S; COG: COG1720; orf. (235 aa)
	rcsF	Regulator in colanic acid synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family. (134 aa)
	yaeC	Putative lipoprotein; Code: P; COG: COG1464; Belongs to the nlpA lipoprotein family. (271 aa)
	yaeE	Putative transport system permease protein; Code: P; COG: COG2011. (217 aa)
	abc	ATP-binding component of a transporter; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (343 aa)
	nlpA	Lipoprotein-28; Code: P; COG: COG1464; Belongs to the nlpA lipoprotein family. (272 aa)

Your Current Organism:

Shigella dysenteriae

NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
abc	nlpA	SDY_0218	SDY_4499	ATP-binding component of a transporter; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	Lipoprotein-28; Code: P; COG: COG1464; Belongs to the nlpA lipoprotein family.	0.993
abc	rcsF	SDY_0218	SDY_0215	ATP-binding component of a transporter; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	Regulator in colanic acid synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.	0.478
abc	yaeB	SDY_0218	SDY_0214	ATP-binding component of a transporter; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	Conserved hypothetical protein; Code: S; COG: COG1720; orf.	0.482
abc	yaeC	SDY_0218	SDY_0216	ATP-binding component of a transporter; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	Putative lipoprotein; Code: P; COG: COG1464; Belongs to the nlpA lipoprotein family.	0.998
abc	yaeE	SDY_0218	SDY_0217	ATP-binding component of a transporter; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	Putative transport system permease protein; Code: P; COG: COG2011.	0.999
nlpA	abc	SDY_4499	SDY_0218	Lipoprotein-28; Code: P; COG: COG1464; Belongs to the nlpA lipoprotein family.	ATP-binding component of a transporter; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.993
nlpA	yaeC	SDY_4499	SDY_0216	Lipoprotein-28; Code: P; COG: COG1464; Belongs to the nlpA lipoprotein family.	Putative lipoprotein; Code: P; COG: COG1464; Belongs to the nlpA lipoprotein family.	0.902
nlpA	yaeE	SDY_4499	SDY_0217	Lipoprotein-28; Code: P; COG: COG1464; Belongs to the nlpA lipoprotein family.	Putative transport system permease protein; Code: P; COG: COG2011.	0.999
rcsF	abc	SDY_0215	SDY_0218	Regulator in colanic acid synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.	ATP-binding component of a transporter; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.478
rcsF	yaeB	SDY_0215	SDY_0214	Regulator in colanic acid synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.	Conserved hypothetical protein; Code: S; COG: COG1720; orf.	0.942
rcsF	yaeC	SDY_0215	SDY_0216	Regulator in colanic acid synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.	Putative lipoprotein; Code: P; COG: COG1464; Belongs to the nlpA lipoprotein family.	0.650
rcsF	yaeE	SDY_0215	SDY_0217	Regulator in colanic acid synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.	Putative transport system permease protein; Code: P; COG: COG2011.	0.434
yaeB	abc	SDY_0214	SDY_0218	Conserved hypothetical protein; Code: S; COG: COG1720; orf.	ATP-binding component of a transporter; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.482
yaeB	rcsF	SDY_0214	SDY_0215	Conserved hypothetical protein; Code: S; COG: COG1720; orf.	Regulator in colanic acid synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.	0.942
yaeB	yaeC	SDY_0214	SDY_0216	Conserved hypothetical protein; Code: S; COG: COG1720; orf.	Putative lipoprotein; Code: P; COG: COG1464; Belongs to the nlpA lipoprotein family.	0.651
yaeB	yaeE	SDY_0214	SDY_0217	Conserved hypothetical protein; Code: S; COG: COG1720; orf.	Putative transport system permease protein; Code: P; COG: COG2011.	0.440
yaeC	abc	SDY_0216	SDY_0218	Putative lipoprotein; Code: P; COG: COG1464; Belongs to the nlpA lipoprotein family.	ATP-binding component of a transporter; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.998
yaeC	nlpA	SDY_0216	SDY_4499	Putative lipoprotein; Code: P; COG: COG1464; Belongs to the nlpA lipoprotein family.	Lipoprotein-28; Code: P; COG: COG1464; Belongs to the nlpA lipoprotein family.	0.902
yaeC	rcsF	SDY_0216	SDY_0215	Putative lipoprotein; Code: P; COG: COG1464; Belongs to the nlpA lipoprotein family.	Regulator in colanic acid synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.	0.650
yaeC	yaeB	SDY_0216	SDY_0214	Putative lipoprotein; Code: P; COG: COG1464; Belongs to the nlpA lipoprotein family.	Conserved hypothetical protein; Code: S; COG: COG1720; orf.	0.651