STRINGSTRING
mviN mviN mviM mviM yceH yceH rimJ rimJ SDY_2087 SDY_2087
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
mviNPutative virulence factor; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. (511 aa)
mviMPutative virulence factor; Code: R; COG: COG0673. (307 aa)
yceHConserved hypothetical protein; Code: S; COG: COG3132; orf; Belongs to the UPF0502 family. (215 aa)
rimJAcetylation of N-terminal alanine of 30S ribosomal subunit protein S5; Code: J; COG: COG1670. (194 aa)
SDY_2087iso-IS1 ORF2; Code: L; COG: COG1662. (131 aa)
Your Current Organism:
Shigella dysenteriae
NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197
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