13 items (Shigella dysenteriae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cpxR	Transcriptional regulator in 2-component system; Code: TK; COG: COG0745. (232 aa)
	SDY_4134	Putative transcriptional regulator; Code: TK; COG: COG0745. (241 aa)
	creB	Catabolic regulation response regulator; Code: TK; COG: COG0745. (229 aa)
	arcA	Negative response regulator of genes in aerobic pathways; Sensors, ArcB and CpxA; Code: TK; COG: COG0745. (238 aa)
	baeR	Transcriptional response regulatory protein; Sensor BaeS; Code: TK; COG: COG0745. (240 aa)
	phoP	Transcriptional regulatory protein; Code: TK; COG: COG0745. (223 aa)
	rstA	Response transcriptional regulatory protein; RstB sensor; Code: TK; COG: COG0745. (238 aa)
	yedW	Putative 2-component transcriptional regulator; Code: TK; COG: COG0745. (232 aa)
	torR	Response transcriptional regulator for torA; Sensor TorS; Code: TK; COG: COG0745. (230 aa)
	kdpE	Regulator of kdp operon; Transcriptional effector; Code: TK; COG: COG0745. (225 aa)
	phoB	Positive response regulator for pho regulon; Sensor is PhoR (or CreC); Code: TK; COG: COG0745. (229 aa)
	ygiX	Putative 2-component transcriptional regulator; Code: TK; COG: COG0745. (219 aa)
	ompR	Response regulator affecting transcription of ompC and ompF; Sensor, EnvZ; outer membrane protein synthesis; Code: TK; COG: COG0745. (239 aa)

Your Current Organism:

Shigella dysenteriae

NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
baeR	rstA	SDY_2186	SDY_1824	Transcriptional response regulatory protein; Sensor BaeS; Code: TK; COG: COG0745.	Response transcriptional regulatory protein; RstB sensor; Code: TK; COG: COG0745.	0.416
kdpE	rstA	SDY_0629	SDY_1824	Regulator of kdp operon; Transcriptional effector; Code: TK; COG: COG0745.	Response transcriptional regulatory protein; RstB sensor; Code: TK; COG: COG0745.	0.411
rstA	baeR	SDY_1824	SDY_2186	Response transcriptional regulatory protein; RstB sensor; Code: TK; COG: COG0745.	Transcriptional response regulatory protein; Sensor BaeS; Code: TK; COG: COG0745.	0.416
rstA	kdpE	SDY_1824	SDY_0629	Response transcriptional regulatory protein; RstB sensor; Code: TK; COG: COG0745.	Regulator of kdp operon; Transcriptional effector; Code: TK; COG: COG0745.	0.411