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fdnH fdnH yjjW yjjW yjeS yjeS frdB frdB fdoH fdoH pflC pflC yiaI yiaI gltD gltD hybA hybA hycB hycB hycF hycF yfhL yfhL hyfA hyfA yffG yffG nuoI nuoI glpC glpC SDY_1899 SDY_1899 rsxC rsxC rsxB rsxB ydiJ ydiJ narY narY SDY_1567 SDY_1567 ydjY ydjY ydbK ydbK narH narH yccM yccM napH napH napG napG napF napF sdhB sdhB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
fdnHFormate dehydrogenase-N, nitrate-inducible, iron-sulfur beta subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers. (294 aa)
yjjWPutative activating enzyme; Code: O; COG: COG1180. (287 aa)
yjeSConserved hypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family. (379 aa)
frdBFumarate reductase, anaerobic, iron-sulfur protein subunit; Code: C; COG: COG0479; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (244 aa)
fdoHFormate dehydrogenase-O, iron-sulfur subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers. (300 aa)
pflCProbable pyruvate formate lyase activating enzyme 2; Code: O; COG: COG1180. (292 aa)
yiaIConserved hypothetical protein; Code: C; COG: COG1142; orf. (157 aa)
gltDGlutamate synthase, small subunit; Code: ER; COG: COG0493. (472 aa)
hybAHydrogenase-2 small subunit; Code: C; COG: COG0437. (328 aa)
hycBProbable small subunit of hydrogenase-3, iron-sulfur protein; Part of formate hydrogenlyase (FHL) complex; Code: C; COG: COG1142. (203 aa)
hycFProbable iron-sulfur protein of hydrogenase 3; Part of FHL complex; Code: C; COG: COG1143. (180 aa)
yfhLConserved hypothetical protein; Code: C; COG: COG1145; orf. (86 aa)
hyfAHydrogenase 4 Fe-S subunit; Code: C; COG: COG1142. (218 aa)
yffGPutative oxidoreductase, Fe-S subunit; Code: ER; COG: COG0493. (659 aa)
nuoINADH dehydrogenase I chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (180 aa)
glpCSn-glycerol-3-phosphate dehydrogenase (anaerobic), K-small subunit; Code: C; COG: COG0247. (396 aa)
SDY_1899Putative oxidoreductase, Fe-S subunit; Code: C; COG: COG0437. (239 aa)
rsxCPutative membrane protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. (772 aa)
rsxBConserved hypothetical protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. (192 aa)
ydiJPutative oxidase; Code: C; COG: COG0277. (1018 aa)
narYCryptic nitrate reductase 2, beta subunit; Code: C; COG: COG1140. (507 aa)
SDY_1567Putative oxidoreductase, Fe-S subunit; Code: C; COG: COG0437. (205 aa)
ydjYConserved hypothetical protein. (225 aa)
ydbKPutative oxidoreductase, Fe-S subunit; Code: C; COG: COG0674. (1174 aa)
narHNitrate reductase 1, beta subunit; Code: C; COG: COG1140. (512 aa)
yccMConserved hypothetical protein; Code: C; COG: COG0348; orf. (186 aa)
napHFerredoxin-type protein; Electron transfer; Code: C; COG: COG0348. (287 aa)
napGFerredoxin-type protein; Electron transfer; Code: C; COG: COG1145. (231 aa)
napFFerredoxin-type protein; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family. (164 aa)
sdhBSuccinate dehydrogenase, iron sulfur protein; Code: C; COG: COG0479; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (238 aa)
Your Current Organism:
Shigella dysenteriae
NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197
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