STRINGSTRING
SDY_0506 SDY_0506 yedW yedW uvrY uvrY narL narL rstA rstA kdpE kdpE phoB phoB creB creB uhpA uhpA SDY_4134 SDY_4134 cpxR cpxR ompR ompR ygiX ygiX baeR baeR phoP phoP arcA arcA torR torR narP narP
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SDY_0506Putative response regulator; Hexosephosphate transport; Code: TK; COG: COG2197. (209 aa)
yedWPutative 2-component transcriptional regulator; Code: TK; COG: COG0745. (232 aa)
uvrYPutative 2-component transcriptional regulator; Code: TK; COG: COG2197. (218 aa)
narLNarL; Pleiotrophic regulation of anaerobic respiration: response regulator for nar, frd, dms and tor genes; Code: TK; COG: COG2197. (216 aa)
rstAResponse transcriptional regulatory protein; RstB sensor; Code: TK; COG: COG0745. (238 aa)
kdpERegulator of kdp operon; Transcriptional effector; Code: TK; COG: COG0745. (225 aa)
phoBPositive response regulator for pho regulon; Sensor is PhoR (or CreC); Code: TK; COG: COG0745. (229 aa)
creBCatabolic regulation response regulator; Code: TK; COG: COG0745. (229 aa)
uhpAResponse regulator, positive activator of uhpT transcription; Sensor, uhpB; Code: TK; COG: COG2197. (196 aa)
SDY_4134Putative transcriptional regulator; Code: TK; COG: COG0745. (241 aa)
cpxRTranscriptional regulator in 2-component system; Code: TK; COG: COG0745. (232 aa)
ompRResponse regulator affecting transcription of ompC and ompF; Sensor, EnvZ; outer membrane protein synthesis; Code: TK; COG: COG0745. (239 aa)
ygiXPutative 2-component transcriptional regulator; Code: TK; COG: COG0745. (219 aa)
baeRTranscriptional response regulatory protein; Sensor BaeS; Code: TK; COG: COG0745. (240 aa)
phoPTranscriptional regulatory protein; Code: TK; COG: COG0745. (223 aa)
arcANegative response regulator of genes in aerobic pathways; Sensors, ArcB and CpxA; Code: TK; COG: COG0745. (238 aa)
torRResponse transcriptional regulator for torA; Sensor TorS; Code: TK; COG: COG0745. (230 aa)
narPNitrate/nitrite response regulator; Sensor NarQ; Code: TK; COG: COG2197. (215 aa)
Your Current Organism:
Shigella dysenteriae
NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197
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