4 items (Shigella dysenteriae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PagP	Hypothetical protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors. (90 aa)
	phoP	Transcriptional regulatory protein; Code: TK; COG: COG0745. (223 aa)
	rstB	Sensor histidine protein kinase; RstA regulator; Code: T; COG: COG0642. (433 aa)
	phoQ	Sensor protein PhoQ; Code: T; COG: COG0642. (486 aa)

Your Current Organism:

Shigella dysenteriae

NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PagP	phoP	SDY_0545	SDY_2022	Hypothetical protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.	Transcriptional regulatory protein; Code: TK; COG: COG0745.	0.693
PagP	phoQ	SDY_0545	SDY_2023	Hypothetical protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.	Sensor protein PhoQ; Code: T; COG: COG0642.	0.626
phoP	PagP	SDY_2022	SDY_0545	Transcriptional regulatory protein; Code: TK; COG: COG0745.	Hypothetical protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.	0.693
phoP	phoQ	SDY_2022	SDY_2023	Transcriptional regulatory protein; Code: TK; COG: COG0745.	Sensor protein PhoQ; Code: T; COG: COG0642.	0.999
phoP	rstB	SDY_2022	SDY_1825	Transcriptional regulatory protein; Code: TK; COG: COG0745.	Sensor histidine protein kinase; RstA regulator; Code: T; COG: COG0642.	0.800
phoQ	PagP	SDY_2023	SDY_0545	Sensor protein PhoQ; Code: T; COG: COG0642.	Hypothetical protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.	0.626
phoQ	phoP	SDY_2023	SDY_2022	Sensor protein PhoQ; Code: T; COG: COG0642.	Transcriptional regulatory protein; Code: TK; COG: COG0745.	0.999
rstB	phoP	SDY_1825	SDY_2022	Sensor histidine protein kinase; RstA regulator; Code: T; COG: COG0642.	Transcriptional regulatory protein; Code: TK; COG: COG0745.	0.800