STRINGSTRING
ompR ompR rho rho lacZ lacZ csgE csgE csgF csgF csgG csgG phoB phoB btuE btuE aceA aceA phoQ phoQ phoP phoP ymdC ymdC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ompRResponse regulator affecting transcription of ompC and ompF; Sensor, EnvZ; outer membrane protein synthesis; Code: TK; COG: COG0745. (239 aa)
rhoTranscription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (419 aa)
lacZbeta-D-galactosidase; Code: G; COG: COG3250; Belongs to the glycosyl hydrolase 2 family. (969 aa)
csgECurli production assembly/transport component; 2nd curli operon. (129 aa)
csgFCurli production assembly/transport component; 2nd curli operon. (138 aa)
csgGCurli production assembly/transport component; 2nd curli operon; Code: M; COG: COG1462. (277 aa)
phoBPositive response regulator for pho regulon; Sensor is PhoR (or CreC); Code: TK; COG: COG0745. (229 aa)
btuEVitamin B12 transport protein; Non-specific peroxidase that can use thioredoxin or glutathione as a reducing agent. (183 aa)
aceAIsocitrate lyase; Code: C; COG: COG2224. (434 aa)
phoQSensor protein PhoQ; Code: T; COG: COG0642. (486 aa)
phoPTranscriptional regulatory protein; Code: TK; COG: COG0745. (223 aa)
ymdCPutative synthase; Catalyzes the synthesis of cardiolipin (CL) (diphosphatidylglycerol) from phosphatidylglycerol (PG) and phosphatidylethanolamine (PE); Belongs to the phospholipase D family. Cardiolipin synthase subfamily. ClsC sub-subfamily. (493 aa)
Your Current Organism:
Shigella dysenteriae
NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197
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