14 items (Shigella dysenteriae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pmrD	Polymyxin resistance protein B. (86 aa)
	lacZ	beta-D-galactosidase; Code: G; COG: COG3250; Belongs to the glycosyl hydrolase 2 family. (969 aa)
	PagP	Hypothetical protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors. (90 aa)
	xasA	Acid sensitivity protein, putative transporter; Code: E; COG: COG0531. (511 aa)
	rstA	Response transcriptional regulatory protein; RstB sensor; Code: TK; COG: COG0745. (238 aa)
	yoaE	Putative transport protein; Code: R; COG: COG1253. (516 aa)
	phoQ	Sensor protein PhoQ; Code: T; COG: COG0642. (486 aa)
	rpoE	RNA polymerase; sigma-E factor; heat shock and oxidative stress; Code: K; COG: COG1595; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)
	yrbL	Conserved hypothetical protein. (210 aa)
	ompR	Response regulator affecting transcription of ompC and ompF; Sensor, EnvZ; outer membrane protein synthesis; Code: TK; COG: COG0745. (239 aa)
	envZ	Protein histidine kinase/phosphatase sensor for OmpR; Modulates expression of ompF and ompC; Code: T; COG: COG0642. (450 aa)
	mgtA	Mg2+ transport ATPase, P-type 1; Code: P; COG: COG0474. (898 aa)
	mdoB	Phosphoglycerol transferase I; Code: M; COG: COG1368. (750 aa)
	yjjT	Putative enzyme; Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle; Belongs to the methyltransferase superfamily. RsmC family. (343 aa)

Your Current Organism:

Shigella dysenteriae

NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PagP	mdoB	SDY_0545	SDY_4613	Hypothetical protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.	Phosphoglycerol transferase I; Code: M; COG: COG1368.	0.465
PagP	mgtA	SDY_0545	SDY_4261	Hypothetical protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.	Mg2+ transport ATPase, P-type 1; Code: P; COG: COG0474.	0.438
PagP	phoQ	SDY_0545	SDY_2023	Hypothetical protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.	Sensor protein PhoQ; Code: T; COG: COG0642.	0.626
PagP	pmrD	SDY_0545	SDY_2455	Hypothetical protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.	Polymyxin resistance protein B.	0.646
PagP	xasA	SDY_0545	SDY_1614	Hypothetical protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.	Acid sensitivity protein, putative transporter; Code: E; COG: COG0531.	0.465
PagP	yoaE	SDY_0545	SDY_1962	Hypothetical protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.	Putative transport protein; Code: R; COG: COG1253.	0.439
envZ	ompR	SDY_3672	SDY_3671	Protein histidine kinase/phosphatase sensor for OmpR; Modulates expression of ompF and ompC; Code: T; COG: COG0642.	Response regulator affecting transcription of ompC and ompF; Sensor, EnvZ; outer membrane protein synthesis; Code: TK; COG: COG0745.	0.999
envZ	phoQ	SDY_3672	SDY_2023	Protein histidine kinase/phosphatase sensor for OmpR; Modulates expression of ompF and ompC; Code: T; COG: COG0642.	Sensor protein PhoQ; Code: T; COG: COG0642.	0.436
envZ	rstA	SDY_3672	SDY_1824	Protein histidine kinase/phosphatase sensor for OmpR; Modulates expression of ompF and ompC; Code: T; COG: COG0642.	Response transcriptional regulatory protein; RstB sensor; Code: TK; COG: COG0745.	0.730
lacZ	ompR	SDY_0378	SDY_3671	beta-D-galactosidase; Code: G; COG: COG3250; Belongs to the glycosyl hydrolase 2 family.	Response regulator affecting transcription of ompC and ompF; Sensor, EnvZ; outer membrane protein synthesis; Code: TK; COG: COG0745.	0.402
lacZ	phoQ	SDY_0378	SDY_2023	beta-D-galactosidase; Code: G; COG: COG3250; Belongs to the glycosyl hydrolase 2 family.	Sensor protein PhoQ; Code: T; COG: COG0642.	0.427
mdoB	PagP	SDY_4613	SDY_0545	Phosphoglycerol transferase I; Code: M; COG: COG1368.	Hypothetical protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.	0.465
mdoB	pmrD	SDY_4613	SDY_2455	Phosphoglycerol transferase I; Code: M; COG: COG1368.	Polymyxin resistance protein B.	0.504
mdoB	rstA	SDY_4613	SDY_1824	Phosphoglycerol transferase I; Code: M; COG: COG1368.	Response transcriptional regulatory protein; RstB sensor; Code: TK; COG: COG0745.	0.439
mdoB	xasA	SDY_4613	SDY_1614	Phosphoglycerol transferase I; Code: M; COG: COG1368.	Acid sensitivity protein, putative transporter; Code: E; COG: COG0531.	0.785
mdoB	yjjT	SDY_4613	SDY_4630	Phosphoglycerol transferase I; Code: M; COG: COG1368.	Putative enzyme; Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle; Belongs to the methyltransferase superfamily. RsmC family.	0.619
mdoB	yoaE	SDY_4613	SDY_1962	Phosphoglycerol transferase I; Code: M; COG: COG1368.	Putative transport protein; Code: R; COG: COG1253.	0.504
mgtA	PagP	SDY_4261	SDY_0545	Mg2+ transport ATPase, P-type 1; Code: P; COG: COG0474.	Hypothetical protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.	0.438
mgtA	phoQ	SDY_4261	SDY_2023	Mg2+ transport ATPase, P-type 1; Code: P; COG: COG0474.	Sensor protein PhoQ; Code: T; COG: COG0642.	0.656
mgtA	pmrD	SDY_4261	SDY_2455	Mg2+ transport ATPase, P-type 1; Code: P; COG: COG0474.	Polymyxin resistance protein B.	0.408