7 items (Shigella dysenteriae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ompA	Outer membrane protein 3a; II*;G;d; Code: M; COG: COG2885; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. (350 aa)
	rstB	Sensor histidine protein kinase; RstA regulator; Code: T; COG: COG0642. (433 aa)
	rstA	Response transcriptional regulatory protein; RstB sensor; Code: TK; COG: COG0745. (238 aa)
	uvrY	Putative 2-component transcriptional regulator; Code: TK; COG: COG2197. (218 aa)
	nirC	Nitrite transporter; Code: P; COG: COG2116. (268 aa)
	ompC	Outer membrane protein 1b; Ib;c; Code: M; COG: COG3203; Belongs to the Gram-negative porin family. (375 aa)
	phoB	Positive response regulator for pho regulon; Sensor is PhoR (or CreC); Code: TK; COG: COG0745. (229 aa)

Your Current Organism:

Shigella dysenteriae

NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ompA	ompC	SDY_0930	SDY_0861	Outer membrane protein 3a; II*;G;d; Code: M; COG: COG2885; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.	Outer membrane protein 1b; Ib;c; Code: M; COG: COG3203; Belongs to the Gram-negative porin family.	0.985
ompC	ompA	SDY_0861	SDY_0930	Outer membrane protein 1b; Ib;c; Code: M; COG: COG3203; Belongs to the Gram-negative porin family.	Outer membrane protein 3a; II*;G;d; Code: M; COG: COG2885; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.	0.985
phoB	rstB	SDY_0338	SDY_1825	Positive response regulator for pho regulon; Sensor is PhoR (or CreC); Code: TK; COG: COG0745.	Sensor histidine protein kinase; RstA regulator; Code: T; COG: COG0642.	0.760
rstA	rstB	SDY_1824	SDY_1825	Response transcriptional regulatory protein; RstB sensor; Code: TK; COG: COG0745.	Sensor histidine protein kinase; RstA regulator; Code: T; COG: COG0642.	0.999
rstA	uvrY	SDY_1824	SDY_1104	Response transcriptional regulatory protein; RstB sensor; Code: TK; COG: COG0745.	Putative 2-component transcriptional regulator; Code: TK; COG: COG2197.	0.414
rstB	phoB	SDY_1825	SDY_0338	Sensor histidine protein kinase; RstA regulator; Code: T; COG: COG0642.	Positive response regulator for pho regulon; Sensor is PhoR (or CreC); Code: TK; COG: COG0745.	0.760
rstB	rstA	SDY_1825	SDY_1824	Sensor histidine protein kinase; RstA regulator; Code: T; COG: COG0642.	Response transcriptional regulatory protein; RstB sensor; Code: TK; COG: COG0745.	0.999
uvrY	rstA	SDY_1104	SDY_1824	Putative 2-component transcriptional regulator; Code: TK; COG: COG2197.	Response transcriptional regulatory protein; RstB sensor; Code: TK; COG: COG0745.	0.414