7 items (Shigella dysenteriae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	glnL	Histidine protein kinase sensor for GlnG regulator; Nitrogen regulator II, NRII; Code: T; COG: COG3852. (349 aa)
	yjdH	Putative 2-component sensor protein; Code: T; COG: COG3290. (543 aa)
	rcsC	Sensor for ctr capsule biosynthesis; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. (933 aa)
	tyrR	TyrR; Transcriptional regulation of aroF, aroG, tyrA and aromatic amino acid transport; Code: KE; COG: COG3283. (513 aa)
	SDY_1423	Conserved hypothetical protein; Code: T; COG: COG2202; orf. (326 aa)
	aer	Aerotaxis sensor receptor, flavoprotein; Code: NT; COG: COG0840. (506 aa)
	arcB	Aerobic respiration sensor-response protein; Histidine protein kinase/phosphatase, sensor for arcA; Code: T; COG: COG0642. (778 aa)

Your Current Organism:

Shigella dysenteriae

NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDY_1423	aer	SDY_1423	SDY_3256	Conserved hypothetical protein; Code: T; COG: COG2202; orf.	Aerotaxis sensor receptor, flavoprotein; Code: NT; COG: COG0840.	0.744
SDY_1423	arcB	SDY_1423	SDY_3391	Conserved hypothetical protein; Code: T; COG: COG2202; orf.	Aerobic respiration sensor-response protein; Histidine protein kinase/phosphatase, sensor for arcA; Code: T; COG: COG0642.	0.971
SDY_1423	rcsC	SDY_1423	SDY_0856	Conserved hypothetical protein; Code: T; COG: COG2202; orf.	Sensor for ctr capsule biosynthesis; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.	0.794
aer	SDY_1423	SDY_3256	SDY_1423	Aerotaxis sensor receptor, flavoprotein; Code: NT; COG: COG0840.	Conserved hypothetical protein; Code: T; COG: COG2202; orf.	0.744
aer	arcB	SDY_3256	SDY_3391	Aerotaxis sensor receptor, flavoprotein; Code: NT; COG: COG0840.	Aerobic respiration sensor-response protein; Histidine protein kinase/phosphatase, sensor for arcA; Code: T; COG: COG0642.	0.976
aer	rcsC	SDY_3256	SDY_0856	Aerotaxis sensor receptor, flavoprotein; Code: NT; COG: COG0840.	Sensor for ctr capsule biosynthesis; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.	0.965
arcB	SDY_1423	SDY_3391	SDY_1423	Aerobic respiration sensor-response protein; Histidine protein kinase/phosphatase, sensor for arcA; Code: T; COG: COG0642.	Conserved hypothetical protein; Code: T; COG: COG2202; orf.	0.971
arcB	aer	SDY_3391	SDY_3256	Aerobic respiration sensor-response protein; Histidine protein kinase/phosphatase, sensor for arcA; Code: T; COG: COG0642.	Aerotaxis sensor receptor, flavoprotein; Code: NT; COG: COG0840.	0.976
arcB	glnL	SDY_3391	SDY_3874	Aerobic respiration sensor-response protein; Histidine protein kinase/phosphatase, sensor for arcA; Code: T; COG: COG0642.	Histidine protein kinase sensor for GlnG regulator; Nitrogen regulator II, NRII; Code: T; COG: COG3852.	0.622
arcB	rcsC	SDY_3391	SDY_0856	Aerobic respiration sensor-response protein; Histidine protein kinase/phosphatase, sensor for arcA; Code: T; COG: COG0642.	Sensor for ctr capsule biosynthesis; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.	0.976
glnL	arcB	SDY_3874	SDY_3391	Histidine protein kinase sensor for GlnG regulator; Nitrogen regulator II, NRII; Code: T; COG: COG3852.	Aerobic respiration sensor-response protein; Histidine protein kinase/phosphatase, sensor for arcA; Code: T; COG: COG0642.	0.622
glnL	rcsC	SDY_3874	SDY_0856	Histidine protein kinase sensor for GlnG regulator; Nitrogen regulator II, NRII; Code: T; COG: COG3852.	Sensor for ctr capsule biosynthesis; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.	0.438
rcsC	SDY_1423	SDY_0856	SDY_1423	Sensor for ctr capsule biosynthesis; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.	Conserved hypothetical protein; Code: T; COG: COG2202; orf.	0.794
rcsC	aer	SDY_0856	SDY_3256	Sensor for ctr capsule biosynthesis; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.	Aerotaxis sensor receptor, flavoprotein; Code: NT; COG: COG0840.	0.965
rcsC	arcB	SDY_0856	SDY_3391	Sensor for ctr capsule biosynthesis; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.	Aerobic respiration sensor-response protein; Histidine protein kinase/phosphatase, sensor for arcA; Code: T; COG: COG0642.	0.976
rcsC	glnL	SDY_0856	SDY_3874	Sensor for ctr capsule biosynthesis; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.	Histidine protein kinase sensor for GlnG regulator; Nitrogen regulator II, NRII; Code: T; COG: COG3852.	0.438