109 items (Pundamilia nyererei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	imp3	IMP U3 small nucleolar ribonucleoprotein 3. (183 aa)
	LOC102213344	Uncharacterized protein. (680 aa)
	nsun6	NOP2/Sun RNA methyltransferase 6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (455 aa)
	rps7	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (186 aa)
	nop53	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (464 aa)
	cebpz	CCAAT enhancer binding protein zeta. (1012 aa)
	gcc1	GRIP and coiled-coil domain containing 1. (761 aa)
	grwd1	Glutamate-rich WD repeat containing 1. (451 aa)
	nsa2	NSA2 ribosome biogenesis homolog (S. cerevisiae). (260 aa)
	glmn	Glomulin, FKBP associated protein a. (606 aa)
	utp6	UTP6 small subunit processome component. (595 aa)
	lyar	Ly1 antibody reactive homolog (mouse). (344 aa)
	ENSPNYP00000003560	Uncharacterized protein. (126 aa)
	rsl1d1	Ribosomal L1 domain containing 1. (364 aa)
	surf6	Surfeit 6. (355 aa)
	ddx55	RNA helicase. (590 aa)
	nop56	NOP56 ribonucleoprotein homolog. (572 aa)
	dcaf13	Ddb1 and cul4 associated factor 13. (445 aa)
	pdcd11	Programmed cell death 11. (1805 aa)
	rtca	RNA 3'-terminal phosphate cyclase. (366 aa)
	rbm34	RNA binding motif protein 34. (425 aa)
	pak1ip1	PAK1 interacting protein 1. (359 aa)
	gnl3	Guanine nucleotide binding protein-like 3 (nucleolar). (480 aa)
	ftsj3	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (734 aa)
	mphosph10	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (679 aa)
	mak16	Protein MAK16 homolog; Belongs to the MAK16 family. (275 aa)
	nexn	Nexilin (F actin binding protein). (822 aa)
	mtrex	Mtr4 exosome RNA helicase. (1037 aa)
	wdr3	WD repeat domain 3. (911 aa)
	noc2l	NOC2-like nucleolar associated transcriptional repressor. (749 aa)
	ddx54	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (468 aa)
	ENSPNYP00000009622	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (89 aa)
	utp15	UTP15 small subunit processome component. (528 aa)
	brix1	Brix domain containing 2. (342 aa)
	rps6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (251 aa)
	bysl	Bystin-like. (435 aa)
	nop14	NOP14 nucleolar protein homolog (yeast). (862 aa)
	dhx37	DEAH (Asp-Glu-Ala-His) box polypeptide 37. (1098 aa)
	LOC102195041	PWP2 small subunit processome component. (723 aa)
	wdr74	WD repeat domain 74. (375 aa)
	rrp15	Ribosomal RNA processing 15 homolog. (241 aa)
	rrp12	Ribosomal RNA processing 12 homolog. (1288 aa)
	pwp1	PWP1 homolog, endonuclein. (484 aa)
	wdr46	WD repeat domain 46. (597 aa)
	ENSPNYP00000014227	Uncharacterized protein. (59 aa)
	bop1	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (679 aa)
	ENSPNYP00000014631	U3snoRNP10 domain-containing protein. (326 aa)
	ENSPNYP00000014665	BP28CT domain-containing protein. (333 aa)
	utp20	UTP20 small subunit processome component. (2794 aa)
	wdr36	WD repeat domain 36. (889 aa)
	wdr75	WD repeat domain 75. (837 aa)
	rcl1	RNA terminal phosphate cyclase-like 1. (372 aa)
	utp11	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (254 aa)
	ngdn	Neuroguidin, EIF4E binding protein. (325 aa)
	gnl2	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (732 aa)
	noc4l	Nucleolar complex associated 4 homolog. (530 aa)
	ddx31	RNA helicase. (597 aa)
	ENSPNYP00000018322	Purinergic receptor P2Y11; Belongs to the G-protein coupled receptor 1 family. (305 aa)
	ppan	Peter pan homolog. (523 aa)
	rbm28	RNA binding motif protein 28. (760 aa)
	fbl	Fibrillarin. (315 aa)
	rrp9	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (482 aa)
	ddx27	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family. (639 aa)
	pum3	Pumilio RNA-binding family member 3. (645 aa)
	nifk	Nucleolar protein interacting with the FHA domain of MKI67. (275 aa)
	ddx18	RNA helicase. (656 aa)
	ddx49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family. (472 aa)
	ebna1bp2	EBNA1 binding protein 2. (314 aa)
	pes1	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (563 aa)
	utp4	UTP4 small subunit processome component. (684 aa)
	tbl3	Transducin (beta)-like 3. (750 aa)
	noc3l	Nucleolar complex protein 3 homolog. (727 aa)
	gnl3l	Guanine nucleotide binding protein-like 3 (nucleolar)-like. (566 aa)
	ENSPNYP00000023311	UTP18 small subunit processome component. (101 aa)
	rbm19	RNA binding motif protein 19. (907 aa)
	LOC102197487	LisH domain-containing protein. (821 aa)
	utp3	UTP3 small subunit processome component. (432 aa)
	nol11	Nucleolar protein 11. (719 aa)
	nip7	NIP7 nucleolar pre-rRNA processing protein. (202 aa)
	mrto4	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (239 aa)
	bms1	BMS1 ribosome biogenesis factor. (1208 aa)
	wdr12	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (421 aa)
	nop58	NOP58 ribonucleoprotein homolog (yeast). (536 aa)
	ddx56	DEAD (Asp-Glu-Ala-Asp) box helicase 56. (560 aa)
	imp4	IMP U3 small nucleolar ribonucleoprotein 4. (291 aa)
	snu13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	nop9	Uncharacterized protein. (613 aa)
	dkc1	Dyskeratosis congenita 1, dyskerin. (502 aa)
	rsl24d1	Ribosomal L24 domain containing 1. (164 aa)
	rrp7a	Ribosomal RNA processing 7 homolog A. (282 aa)
	nol10	Nucleolar protein 10. (725 aa)
	ddx47	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family. (481 aa)
	krr1	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (386 aa)
	nol6	Nucleolar protein 6. (1138 aa)
	ddx52	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52. (581 aa)
	LOC102196603	Glomulin, FKBP associated protein b. (520 aa)
	cep152	Centrosomal protein 152. (1473 aa)
	dnttip2	Deoxynucleotidyltransferase, terminal, interacting protein 2. (901 aa)
	ENSPNYP00000028953	Apoptosis antagonizing transcription factor. (466 aa)
	nat10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1035 aa)
	ENSPNYP00000029539	Uncharacterized protein. (247 aa)
	nhp2	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (154 aa)
	ddx24	DEAD (Asp-Glu-Ala-Asp) box helicase 24. (870 aa)
	UTP14C	UTP14C small subunit processome component. (775 aa)
	rpf1	Ribosome production factor 1 homolog. (349 aa)
	wdr43	WD repeat domain 43. (650 aa)
	nop2	NOP2 nucleolar protein homolog (yeast); Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (706 aa)
	emg1	EMG1 N1-specific pseudouridine methyltransferase. (237 aa)
	gtpbp4	GTP binding protein 4. (565 aa)

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNYP00000003560	ENSPNYP00000009622	ENSPNYP00000003560	ENSPNYP00000009622	Uncharacterized protein.	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily.	0.698
ENSPNYP00000003560	ENSPNYP00000014227	ENSPNYP00000003560	ENSPNYP00000014227	Uncharacterized protein.	Uncharacterized protein.	0.999
ENSPNYP00000003560	ENSPNYP00000014631	ENSPNYP00000003560	ENSPNYP00000014631	Uncharacterized protein.	U3snoRNP10 domain-containing protein.	0.511
ENSPNYP00000003560	ENSPNYP00000014665	ENSPNYP00000003560	ENSPNYP00000014665	Uncharacterized protein.	BP28CT domain-containing protein.	0.511
ENSPNYP00000003560	ENSPNYP00000018322	ENSPNYP00000003560	ENSPNYP00000018322	Uncharacterized protein.	Purinergic receptor P2Y11; Belongs to the G-protein coupled receptor 1 family.	0.893
ENSPNYP00000003560	ENSPNYP00000023311	ENSPNYP00000003560	ENSPNYP00000023311	Uncharacterized protein.	UTP18 small subunit processome component.	0.850
ENSPNYP00000003560	ENSPNYP00000028953	ENSPNYP00000003560	ENSPNYP00000028953	Uncharacterized protein.	Apoptosis antagonizing transcription factor.	0.463
ENSPNYP00000003560	ENSPNYP00000029539	ENSPNYP00000003560	ENSPNYP00000029539	Uncharacterized protein.	Uncharacterized protein.	0.843
ENSPNYP00000003560	LOC102195041	ENSPNYP00000003560	ENSPNYP00000011032	Uncharacterized protein.	PWP2 small subunit processome component.	0.862
ENSPNYP00000003560	LOC102197487	ENSPNYP00000003560	ENSPNYP00000023535	Uncharacterized protein.	LisH domain-containing protein.	0.870
ENSPNYP00000003560	LOC102213344	ENSPNYP00000003560	ENSPNYP00000000558	Uncharacterized protein.	Uncharacterized protein.	0.966
ENSPNYP00000003560	UTP14C	ENSPNYP00000003560	ENSPNYP00000030335	Uncharacterized protein.	UTP14C small subunit processome component.	0.895
ENSPNYP00000003560	bms1	ENSPNYP00000003560	ENSPNYP00000025064	Uncharacterized protein.	BMS1 ribosome biogenesis factor.	0.919
ENSPNYP00000003560	bop1	ENSPNYP00000003560	ENSPNYP00000014414	Uncharacterized protein.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.862
ENSPNYP00000003560	brix1	ENSPNYP00000003560	ENSPNYP00000010167	Uncharacterized protein.	Brix domain containing 2.	0.978
ENSPNYP00000003560	bysl	ENSPNYP00000003560	ENSPNYP00000010314	Uncharacterized protein.	Bystin-like.	0.940
ENSPNYP00000003560	cebpz	ENSPNYP00000003560	ENSPNYP00000001922	Uncharacterized protein.	CCAAT enhancer binding protein zeta.	0.885
ENSPNYP00000003560	cep152	ENSPNYP00000003560	ENSPNYP00000028472	Uncharacterized protein.	Centrosomal protein 152.	0.837
ENSPNYP00000003560	dcaf13	ENSPNYP00000003560	ENSPNYP00000004973	Uncharacterized protein.	Ddb1 and cul4 associated factor 13.	0.865
ENSPNYP00000003560	ddx18	ENSPNYP00000003560	ENSPNYP00000021746	Uncharacterized protein.	RNA helicase.	0.914