STRINGSTRING
slu7 slu7 rbm22 rbm22 armc7 armc7 LOC102200440 LOC102200440 sf3a3 sf3a3 prpf19 prpf19 txnl4a txnl4a dhx8 dhx8 DDX39A DDX39A dhx35 dhx35 dhx32 dhx32 hfm1 hfm1 prpf6 prpf6 crnkl1 crnkl1 sf3b5 sf3b5 prpf31 prpf31 SMU1 SMU1 LOC102192804 LOC102192804 LSM10 LSM10 snrnp70 snrnp70 snrpa1 snrpa1 prpf4b prpf4b prpf18 prpf18 sf3b3 sf3b3 cript cript txnl4b txnl4b mfap1 mfap1 ENSPNYP00000005329 ENSPNYP00000005329 prpf3 prpf3 phf5a phf5a wbp4 wbp4 ENSPNYP00000006096 ENSPNYP00000006096 ENSPNYP00000006193 ENSPNYP00000006193 SNRPC SNRPC syf2 syf2 ENSPNYP00000006596 ENSPNYP00000006596 cwc27 cwc27 ppil2 ppil2 ppwd1 ppwd1 prpf38a prpf38a snrpe snrpe wdr53 wdr53 UBL5 UBL5 ENSPNYP00000008031 ENSPNYP00000008031 snrpa snrpa cactin cactin ppie ppie LOC102212555 LOC102212555 sf3a2 sf3a2 smu1 smu1 GPR149 GPR149 dhx34 dhx34 prpf4 prpf4 zcrb1 zcrb1 WDR70 WDR70 snrnp27 snrnp27 zmat5 zmat5 ENSPNYP00000011626 ENSPNYP00000011626 snrpg snrpg rbm48 rbm48 LOC102196245 LOC102196245 ENSPNYP00000012475 ENSPNYP00000012475 lsm3 lsm3 snrnp40 snrnp40 zcchc17 zcchc17 nkap nkap ppih ppih cwc22 cwc22 cdc40 cdc40 ppil4 ppil4 lsm8 lsm8 daw1 daw1 snrpd2 snrpd2 ENSPNYP00000015818 ENSPNYP00000015818 ddx46 ddx46 eftud2 eftud2 scnm1 scnm1 sf3b4 sf3b4 rbm41 rbm41 SNIP1 SNIP1 snrpd3 snrpd3 yju2 yju2 dhx40 dhx40 shd shd dhx38 dhx38 LOC102204925 LOC102204925 plrg1 plrg1 rnf113a rnf113a ENSPNYP00000018434 ENSPNYP00000018434 ddx42 ddx42 cd2bp2 cd2bp2 pqbp1 pqbp1 gpkow gpkow xab2 xab2 ZNF830 ZNF830 bcas2 bcas2 SART1 SART1 usp39 usp39 snrpb snrpb ctnnbl1 ctnnbl1 sf3b1 sf3b1 ENSPNYP00000019900 ENSPNYP00000019900 snrpb2 snrpb2 ccdc12 ccdc12 prpf8 prpf8 sde2 sde2 aqr aqr ENSPNYP00000022113 ENSPNYP00000022113 TCERG1 TCERG1 snrnp200 snrnp200 tfip11 tfip11 bud31 bud31 ncmap ncmap sf3a1 sf3a1 dhx16 dhx16 ENSPNYP00000025024 ENSPNYP00000025024 WDR25 WDR25 lsm2 lsm2 cwc15 cwc15 ppil1 ppil1 rnpc3 rnpc3 wbp11 wbp11 ddx23 ddx23 ENSPNYP00000028858 ENSPNYP00000028858 sf3b6 sf3b6 prkrip1 prkrip1 ENSPNYP00000029188 ENSPNYP00000029188 fam32a fam32a parpbp parpbp snw1 snw1 zmat2 zmat2 sf3b2 sf3b2 ENSPNYP00000031633 ENSPNYP00000031633 ENSPNYP00000031925 ENSPNYP00000031925 ENSPNYP00000031986 ENSPNYP00000031986
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
slu7SLU7 homolog, splicing factor. (566 aa)
rbm22RNA binding motif protein 22. (363 aa)
armc7Armadillo repeat containing 7. (191 aa)
LOC102200440Uncharacterized protein. (180 aa)
sf3a3Splicing factor 3a, subunit 3. (501 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
dhx8DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1213 aa)
DDX39ADExD-box helicase 39A. (439 aa)
dhx35DEAH-box helicase 35. (699 aa)
dhx32DEAH (Asp-Glu-Ala-His) box polypeptide 32a. (726 aa)
hfm1Helicase for meiosis 1. (1047 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (892 aa)
crnkl1Crooked neck pre-mRNA splicing factor 1. (755 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (507 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
LOC102192804Si:dkey-93h22.8. (1173 aa)
LSM10LSM10, U7 small nuclear RNA associated. (123 aa)
snrnp70Small nuclear ribonucleoprotein 70 (U1). (475 aa)
snrpa1Small nuclear ribonucleoprotein polypeptide A. (243 aa)
prpf4bPre-mRNA processing factor 4Bb. (1014 aa)
prpf18PRP18 pre-mRNA processing factor 18 homolog (yeast). (350 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
criptCysteine-rich PDZ-binding protein. (101 aa)
txnl4bThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
mfap1Microfibril associated protein 1. (441 aa)
ENSPNYP00000005329Slu7 domain-containing protein. (228 aa)
prpf3PRP3 pre-mRNA processing factor 3 homolog (yeast). (723 aa)
phf5aPHD finger protein 5A. (110 aa)
wbp4Uncharacterized protein. (416 aa)
ENSPNYP00000006096Helicase ATP-binding domain-containing protein. (93 aa)
ENSPNYP00000006193Uncharacterized protein. (73 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (134 aa)
syf2SYF2 pre-mRNA-splicing factor. (238 aa)
ENSPNYP00000006596PWI domain-containing protein. (238 aa)
cwc27CWC27 spliceosome associated cyclophilin. (450 aa)
ppil2Peptidylprolyl isomerase (cyclophilin)-like 2. (525 aa)
ppwd1Peptidylprolyl isomerase domain and WD repeat containing 1. (626 aa)
prpf38aPre-mRNA processing factor 38A. (309 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
wdr53WD repeat domain 53. (383 aa)
UBL5Ubiquitin like 5. (73 aa)
ENSPNYP00000008031Cir_N domain-containing protein. (67 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (280 aa)
cactinCactin. (731 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (299 aa)
LOC102212555DEAH (Asp-Glu-Ala-His) box helicase 15. (751 aa)
sf3a2Splicing factor 3a, subunit 2. (294 aa)
smu1SMU1 DNA replication regulator and spliceosomal factor b. (507 aa)
GPR149G protein-coupled receptor 149. (731 aa)
dhx34DEAH (Asp-Glu-Ala-His) box polypeptide 34. (1135 aa)
prpf4PRP4 pre-mRNA processing factor 4 homolog (yeast). (510 aa)
zcrb1Zinc finger CCHC-type and RNA binding motif 1. (219 aa)
WDR70WD repeat domain 70. (654 aa)
snrnp27Small nuclear ribonucleoprotein 27 (U4/U6.U5). (158 aa)
zmat5Zinc finger, matrin-type 5. (175 aa)
ENSPNYP00000011626Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (162 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
rbm48RNA binding motif protein 48. (345 aa)
LOC102196245Uncharacterized protein. (187 aa)
ENSPNYP00000012475Cwf21 domain-containing protein. (187 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (139 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
zcchc17Zinc finger, CCHC domain containing 17. (248 aa)
nkapNFKB activating protein. (412 aa)
ppihPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)
cwc22CWC22 spliceosome associated protein homolog. (687 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (581 aa)
ppil4Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (470 aa)
lsm8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
daw1Dynein assembly factor with WDR repeat domains 1. (414 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
ENSPNYP00000015818Ig-like domain-containing protein. (182 aa)
ddx46DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (959 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
scnm1Sodium channel modifier 1. (254 aa)
sf3b4Splicing factor 3b, subunit 4. (401 aa)
rbm41RNA binding motif protein 41. (444 aa)
SNIP1Smad nuclear interacting protein 1. (376 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
yju2YJU2 splicing factor homolog. (340 aa)
dhx40DEAH (Asp-Glu-Ala-His) box polypeptide 40. (734 aa)
shdSrc homology 2 domain containing transforming protein D, a. (406 aa)
dhx38DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1242 aa)
LOC102204925Leucine rich repeat containing 51. (179 aa)
plrg1Pleiotropic regulator 1. (551 aa)
rnf113aRing finger protein 113A. (322 aa)
ENSPNYP00000018434Uncharacterized protein. (144 aa)
ddx42DEAD (Asp-Glu-Ala-Asp) box helicase 42; Belongs to the DEAD box helicase family. (777 aa)
cd2bp2CD2 (cytoplasmic tail) binding protein 2. (341 aa)
pqbp1Polyglutamine binding protein 1. (231 aa)
gpkowG patch domain and KOW motifs. (518 aa)
xab2XPA binding protein 2. (849 aa)
ZNF830Zinc finger protein 830. (345 aa)
bcas2BCAS2 pre-mRNA processing factor. (225 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (769 aa)
usp39Ubiquitin specific peptidase 39. (500 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (240 aa)
ctnnbl1Catenin, beta like 1. (577 aa)
sf3b1Splicing factor 3b, subunit 1. (1311 aa)
ENSPNYP00000019900Uncharacterized protein. (164 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (247 aa)
ccdc12Coiled-coil domain containing 12. (163 aa)
prpf8Pre-mRNA processing factor 8. (2333 aa)
sde2SDE2 telomere maintenance homolog (S. pombe). (365 aa)
aqrAquarius intron-binding spliceosomal factor. (1472 aa)
ENSPNYP00000022113Si:zfos-375h5.1. (200 aa)
TCERG1Transcription elongation regulator 1. (1018 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2063 aa)
tfip11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (830 aa)
bud31BUD31 homolog. (134 aa)
ncmapUncharacterized protein. (117 aa)
sf3a1Splicing factor 3a, subunit 1. (784 aa)
dhx16DEAH (Asp-Glu-Ala-His) box polypeptide 16. (970 aa)
ENSPNYP00000025024Uncharacterized protein. (101 aa)
WDR25WD repeat domain 25. (503 aa)
lsm2Smx5. (140 aa)
cwc15CWC15 spliceosome associated protein homolog. (237 aa)
ppil1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
rnpc3RNA-binding region (RNP1, RRM) containing 3. (498 aa)
wbp11Uncharacterized protein. (737 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (832 aa)
ENSPNYP00000028858Small nuclear ribonucleoprotein polypeptide F. (85 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
prkrip1PRKR interacting protein 1. (193 aa)
ENSPNYP00000029188RED_C domain-containing protein. (160 aa)
fam32aFamily with sequence similarity 32 member A. (113 aa)
parpbpPARP1 binding protein. (536 aa)
snw1SNW domain containing 1. (536 aa)
zmat2Zinc finger, matrin-type 2. (201 aa)
sf3b2Splicing factor 3b, subunit 2. (740 aa)
ENSPNYP00000031633Cir_N domain-containing protein. (125 aa)
ENSPNYP00000031925Slu7 domain-containing protein. (505 aa)
ENSPNYP00000031986Nuclear speckle splicing regulatory protein 1. (524 aa)
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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