(13 nodes) Mixed, incl. tRNA selenocysteine 1-associated protein 1, and RBM25, RNA recognition motif network (Pundamilia nyererei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPNYP00000002037	WW domain-containing protein. (159 aa)
	prpf39	PRP39 pre-mRNA processing factor 39 homolog (yeast). (778 aa)
	sf1	Splicing factor 1. (680 aa)
	wac	WW domain containing adaptor with coiled-coil a. (544 aa)
	trnau1ap	tRNA selenocysteine 1 associated protein 1a. (308 aa)
	ppp1r10	Protein phosphatase 1, regulatory subunit 10. (790 aa)
	LOC102208908	tRNA selenocysteine 1 associated protein 1b. (326 aa)
	ENSPNYP00000016068	RRM domain-containing protein. (80 aa)
	LOC102213887	Si:ch211-114c17.1. (646 aa)
	ENSPNYP00000023738	LUC7-like (S. cerevisiae). (260 aa)
	LOC102201471	RNA binding motif protein 25a. (801 aa)
	rbm25	RNA binding motif protein 25b. (791 aa)
	LOC102202464	Zgc:158803. (433 aa)

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNYP00000002037	ENSPNYP00000023738	ENSPNYP00000002037	ENSPNYP00000023738	WW domain-containing protein.	LUC7-like (S. cerevisiae).	0.759
ENSPNYP00000002037	LOC102201471	ENSPNYP00000002037	ENSPNYP00000029971	WW domain-containing protein.	RNA binding motif protein 25a.	0.902
ENSPNYP00000002037	LOC102202464	ENSPNYP00000002037	ENSPNYP00000031774	WW domain-containing protein.	Zgc:158803.	0.759
ENSPNYP00000002037	LOC102213887	ENSPNYP00000002037	ENSPNYP00000020327	WW domain-containing protein.	Si:ch211-114c17.1.	0.770
ENSPNYP00000002037	ppp1r10	ENSPNYP00000002037	ENSPNYP00000014985	WW domain-containing protein.	Protein phosphatase 1, regulatory subunit 10.	0.827
ENSPNYP00000002037	prpf39	ENSPNYP00000002037	ENSPNYP00000002541	WW domain-containing protein.	PRP39 pre-mRNA processing factor 39 homolog (yeast).	0.770
ENSPNYP00000002037	rbm25	ENSPNYP00000002037	ENSPNYP00000030922	WW domain-containing protein.	RNA binding motif protein 25b.	0.902
ENSPNYP00000002037	sf1	ENSPNYP00000002037	ENSPNYP00000006057	WW domain-containing protein.	Splicing factor 1.	0.827
ENSPNYP00000016068	ENSPNYP00000023738	ENSPNYP00000016068	ENSPNYP00000023738	RRM domain-containing protein.	LUC7-like (S. cerevisiae).	0.730
ENSPNYP00000016068	LOC102201471	ENSPNYP00000016068	ENSPNYP00000029971	RRM domain-containing protein.	RNA binding motif protein 25a.	0.740
ENSPNYP00000016068	LOC102202464	ENSPNYP00000016068	ENSPNYP00000031774	RRM domain-containing protein.	Zgc:158803.	0.730
ENSPNYP00000016068	LOC102213887	ENSPNYP00000016068	ENSPNYP00000020327	RRM domain-containing protein.	Si:ch211-114c17.1.	0.880
ENSPNYP00000016068	ppp1r10	ENSPNYP00000016068	ENSPNYP00000014985	RRM domain-containing protein.	Protein phosphatase 1, regulatory subunit 10.	0.405
ENSPNYP00000016068	prpf39	ENSPNYP00000016068	ENSPNYP00000002541	RRM domain-containing protein.	PRP39 pre-mRNA processing factor 39 homolog (yeast).	0.879
ENSPNYP00000016068	rbm25	ENSPNYP00000016068	ENSPNYP00000030922	RRM domain-containing protein.	RNA binding motif protein 25b.	0.740
ENSPNYP00000016068	sf1	ENSPNYP00000016068	ENSPNYP00000006057	RRM domain-containing protein.	Splicing factor 1.	0.856
ENSPNYP00000023738	ENSPNYP00000002037	ENSPNYP00000023738	ENSPNYP00000002037	LUC7-like (S. cerevisiae).	WW domain-containing protein.	0.759
ENSPNYP00000023738	ENSPNYP00000016068	ENSPNYP00000023738	ENSPNYP00000016068	LUC7-like (S. cerevisiae).	RRM domain-containing protein.	0.730
ENSPNYP00000023738	LOC102201471	ENSPNYP00000023738	ENSPNYP00000029971	LUC7-like (S. cerevisiae).	RNA binding motif protein 25a.	0.970
ENSPNYP00000023738	LOC102208908	ENSPNYP00000023738	ENSPNYP00000016046	LUC7-like (S. cerevisiae).	tRNA selenocysteine 1 associated protein 1b.	0.730