STRINGSTRING
sqstm1 sqstm1 pdik1l pdik1l LOC102199188 LOC102199188 atg12 atg12 nbr1 nbr1 LOC102215228 LOC102215228 gabarapl2 gabarapl2 gabarap gabarap ENSPNYP00000012991 ENSPNYP00000012991 atg5 atg5 atg4c atg4c atg7 atg7 LOC106455903 LOC106455903 atg4b atg4b map1lc3b map1lc3b atg3 atg3 LOC102208502 LOC102208502
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sqstm1Sequestosome 1. (428 aa)
pdik1lPDLIM1 interacting kinase 1 like; Belongs to the protein kinase superfamily. (341 aa)
LOC102199188Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (494 aa)
atg12Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (117 aa)
nbr1NBR1 autophagy cargo receptor a. (1070 aa)
LOC102215228NBR1 autophagy cargo receptor b. (693 aa)
gabarapl2GABA(A) receptor-associated protein like 2. (117 aa)
gabarapGABA(A) receptor-associated protein b. (122 aa)
ENSPNYP00000012991ATG16 autophagy related 16-like 2 (S. cerevisiae). (292 aa)
atg5Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)
atg4cCysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (480 aa)
atg7Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 as well as the ATG8 family proteins for their conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Required for autophagic death induced by caspase-8 inhibition. Required for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria [...] (720 aa)
LOC106455903GABA type A receptor associated protein like 2. (121 aa)
atg4bCysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (394 aa)
map1lc3bMicrotubule-associated protein 1 light chain 3 beta. (126 aa)
atg3Autophagy-related protein 3. (313 aa)
LOC102208502Zgc:92606. (117 aa)
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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