6 items (Pundamilia nyererei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sqstm1	Sequestosome 1. (428 aa)
	nbr1	NBR1 autophagy cargo receptor a. (1070 aa)
	LOC102215228	NBR1 autophagy cargo receptor b. (693 aa)
	gabarapl2	GABA(A) receptor-associated protein like 2. (117 aa)
	gabarap	GABA(A) receptor-associated protein b. (122 aa)
	map1lc3b	Microtubule-associated protein 1 light chain 3 beta. (126 aa)

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102215228	gabarap	ENSPNYP00000003205	ENSPNYP00000008586	NBR1 autophagy cargo receptor b.	GABA(A) receptor-associated protein b.	0.999
LOC102215228	gabarapl2	ENSPNYP00000003205	ENSPNYP00000005152	NBR1 autophagy cargo receptor b.	GABA(A) receptor-associated protein like 2.	0.999
LOC102215228	map1lc3b	ENSPNYP00000003205	ENSPNYP00000029290	NBR1 autophagy cargo receptor b.	Microtubule-associated protein 1 light chain 3 beta.	0.999
LOC102215228	nbr1	ENSPNYP00000003205	ENSPNYP00000002027	NBR1 autophagy cargo receptor b.	NBR1 autophagy cargo receptor a.	0.998
LOC102215228	sqstm1	ENSPNYP00000003205	ENSPNYP00000000010	NBR1 autophagy cargo receptor b.	Sequestosome 1.	0.970
gabarap	LOC102215228	ENSPNYP00000008586	ENSPNYP00000003205	GABA(A) receptor-associated protein b.	NBR1 autophagy cargo receptor b.	0.999
gabarap	gabarapl2	ENSPNYP00000008586	ENSPNYP00000005152	GABA(A) receptor-associated protein b.	GABA(A) receptor-associated protein like 2.	0.825
gabarap	map1lc3b	ENSPNYP00000008586	ENSPNYP00000029290	GABA(A) receptor-associated protein b.	Microtubule-associated protein 1 light chain 3 beta.	0.813
gabarap	nbr1	ENSPNYP00000008586	ENSPNYP00000002027	GABA(A) receptor-associated protein b.	NBR1 autophagy cargo receptor a.	0.999
gabarap	sqstm1	ENSPNYP00000008586	ENSPNYP00000000010	GABA(A) receptor-associated protein b.	Sequestosome 1.	0.961
gabarapl2	LOC102215228	ENSPNYP00000005152	ENSPNYP00000003205	GABA(A) receptor-associated protein like 2.	NBR1 autophagy cargo receptor b.	0.999
gabarapl2	gabarap	ENSPNYP00000005152	ENSPNYP00000008586	GABA(A) receptor-associated protein like 2.	GABA(A) receptor-associated protein b.	0.825
gabarapl2	map1lc3b	ENSPNYP00000005152	ENSPNYP00000029290	GABA(A) receptor-associated protein like 2.	Microtubule-associated protein 1 light chain 3 beta.	0.812
gabarapl2	nbr1	ENSPNYP00000005152	ENSPNYP00000002027	GABA(A) receptor-associated protein like 2.	NBR1 autophagy cargo receptor a.	0.999
gabarapl2	sqstm1	ENSPNYP00000005152	ENSPNYP00000000010	GABA(A) receptor-associated protein like 2.	Sequestosome 1.	0.952
map1lc3b	LOC102215228	ENSPNYP00000029290	ENSPNYP00000003205	Microtubule-associated protein 1 light chain 3 beta.	NBR1 autophagy cargo receptor b.	0.999
map1lc3b	gabarap	ENSPNYP00000029290	ENSPNYP00000008586	Microtubule-associated protein 1 light chain 3 beta.	GABA(A) receptor-associated protein b.	0.813
map1lc3b	gabarapl2	ENSPNYP00000029290	ENSPNYP00000005152	Microtubule-associated protein 1 light chain 3 beta.	GABA(A) receptor-associated protein like 2.	0.812
map1lc3b	nbr1	ENSPNYP00000029290	ENSPNYP00000002027	Microtubule-associated protein 1 light chain 3 beta.	NBR1 autophagy cargo receptor a.	0.999
map1lc3b	sqstm1	ENSPNYP00000029290	ENSPNYP00000000010	Microtubule-associated protein 1 light chain 3 beta.	Sequestosome 1.	0.970