STRINGSTRING
snrpd2 snrpd2 gemin5 gemin5 ddx20 ddx20 snrpb snrpb gemin2 gemin2 ENSPNYP00000028858 ENSPNYP00000028858 clns1a clns1a lsm2 lsm2 prmt5 prmt5 gemin6 gemin6 lsm4 lsm4 prpf8 prpf8 LOC102192481 LOC102192481 strap strap sart3 sart3 ENSPNYP00000020310 ENSPNYP00000020310 prpf19 prpf19 prpf6 prpf6 prpf31 prpf31 prmt7 prmt7 prpf3 prpf3 SNRPC SNRPC gemin7 gemin7 snrpe snrpe snrpg snrpg gemin4 gemin4 snrpd1 snrpd1 snrpd3 snrpd3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
gemin5Gem (nuclear organelle) associated protein 5. (1419 aa)
ddx20DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family. (792 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (240 aa)
gemin2Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (266 aa)
ENSPNYP00000028858Small nuclear ribonucleoprotein polypeptide F. (85 aa)
clns1aChloride channel, nucleotide-sensitive, 1A. (230 aa)
lsm2Smx5. (140 aa)
prmt5Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily. (631 aa)
gemin6Gem (nuclear organelle) associated protein 6. (169 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (146 aa)
prpf8Pre-mRNA processing factor 8. (2333 aa)
LOC102192481Survival of motor neuron 1, telomeric. (282 aa)
strapSerine/threonine kinase receptor associated protein. (329 aa)
sart3Spliceosome associated factor 3, U4/U6 recycling protein. (950 aa)
ENSPNYP00000020310Gem (nuclear organelle) associated protein 8. (201 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (892 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (507 aa)
prmt7Protein arginine N-methyltransferase; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins Sm D1 (SNRPD1) and Sm D3 (SNRPD3); such methylation being required for the assembly and biogenesis of snRNP core particles. Specifically mediates the symmetric dimethylation of histone H4 'Arg-3' to form H4R3me2s. Plays a role in gene imprinting by being r [...] (685 aa)
prpf3PRP3 pre-mRNA processing factor 3 homolog (yeast). (723 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (134 aa)
gemin7Gem (nuclear organelle) associated protein 7. (128 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
gemin4Gem (nuclear organelle) associated protein 4. (1114 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (202 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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