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prpf18 prpf18 snrpa1 snrpa1 SMU1 SMU1 prpf31 prpf31 sf3b5 sf3b5 prpf39 prpf39 crnkl1 crnkl1 prpf6 prpf6 prpf40a prpf40a u2af2 u2af2 eif4a3 eif4a3 lsm4 lsm4 htatsf1 htatsf1 aqr aqr prpf8 prpf8 ccdc12 ccdc12 ccdc130 ccdc130 LOC102213887 LOC102213887 sf3b1 sf3b1 snrpb snrpb SART1 SART1 bcas2 bcas2 xab2 xab2 rnf113a rnf113a plrg1 plrg1 rbm8a rbm8a shd shd yju2 yju2 snrpd3 snrpd3 luc7l3 luc7l3 SNIP1 SNIP1 sf3b4 sf3b4 lsm6 lsm6 eftud2 eftud2 casc3 casc3 snrpd2 snrpd2 LOC102199287 LOC102199287 lsm8 lsm8 snrpd1 snrpd1 cdc40 cdc40 cwc22 cwc22 snrnp40 snrnp40 lsm3 lsm3 snrpg snrpg DHX15 DHX15 prpf4 prpf4 dhx34 dhx34 ENSPNYP00000010244 ENSPNYP00000010244 dhx8 dhx8 prpf3 prpf3 mfap1 mfap1 sf3b3 sf3b3 txnl4a txnl4a prpf19 prpf19 sf3a3 sf3a3 rbm22 rbm22 wbp4 wbp4 phf5a phf5a lsm7 lsm7 sf3a2 sf3a2 LOC102212555 LOC102212555 ppie ppie ENSPNYP00000008031 ENSPNYP00000008031 snrpe snrpe smu1 smu1 prpf38a prpf38a cwc27 cwc27 syf2 syf2 SNRPC SNRPC LOC102202464 LOC102202464 ENSPNYP00000031633 ENSPNYP00000031633 sf3b2 sf3b2 zmat2 zmat2 lsm5 lsm5 snw1 snw1 sf3b6 sf3b6 ENSPNYP00000028858 ENSPNYP00000028858 ppil1 ppil1 snu13 snu13 cwc15 cwc15 lsm2 lsm2 dhx16 dhx16 sf3a1 sf3a1 tfip11 tfip11 ENSPNYP00000023738 ENSPNYP00000023738 snrnp200 snrnp200
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
prpf18PRP18 pre-mRNA processing factor 18 homolog (yeast). (350 aa)
snrpa1Small nuclear ribonucleoprotein polypeptide A. (243 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (507 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
prpf39PRP39 pre-mRNA processing factor 39 homolog (yeast). (778 aa)
crnkl1Crooked neck pre-mRNA splicing factor 1. (755 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (892 aa)
prpf40aPRP40 pre-mRNA processing factor 40 homolog A. (817 aa)
u2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (470 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (146 aa)
htatsf1HIV-1 Tat specific factor 1. (452 aa)
aqrAquarius intron-binding spliceosomal factor. (1472 aa)
prpf8Pre-mRNA processing factor 8. (2333 aa)
ccdc12Coiled-coil domain containing 12. (163 aa)
ccdc130Coiled-coil domain containing 130. (401 aa)
LOC102213887Si:ch211-114c17.1. (646 aa)
sf3b1Splicing factor 3b, subunit 1. (1311 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (240 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (769 aa)
bcas2BCAS2 pre-mRNA processing factor. (225 aa)
xab2XPA binding protein 2. (849 aa)
rnf113aRing finger protein 113A. (322 aa)
plrg1Pleiotropic regulator 1. (551 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
shdSrc homology 2 domain containing transforming protein D, a. (406 aa)
yju2YJU2 splicing factor homolog. (340 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
luc7l3LUC7-like 3 pre-mRNA splicing factor. (487 aa)
SNIP1Smad nuclear interacting protein 1. (376 aa)
sf3b4Splicing factor 3b, subunit 4. (401 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (81 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
casc3Casc3 exon junction complex subunit. (762 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
LOC102199287U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (466 aa)
lsm8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (202 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (581 aa)
cwc22CWC22 spliceosome associated protein homolog. (687 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (139 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
DHX15DEAH-box helicase 15. (762 aa)
prpf4PRP4 pre-mRNA processing factor 4 homolog (yeast). (510 aa)
dhx34DEAH (Asp-Glu-Ala-His) box polypeptide 34. (1135 aa)
ENSPNYP00000010244Serine/arginine repetitive matrix 4. (444 aa)
dhx8DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1213 aa)
prpf3PRP3 pre-mRNA processing factor 3 homolog (yeast). (723 aa)
mfap1Microfibril associated protein 1. (441 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
sf3a3Splicing factor 3a, subunit 3. (501 aa)
rbm22RNA binding motif protein 22. (363 aa)
wbp4Uncharacterized protein. (416 aa)
phf5aPHD finger protein 5A. (110 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
sf3a2Splicing factor 3a, subunit 2. (294 aa)
LOC102212555DEAH (Asp-Glu-Ala-His) box helicase 15. (751 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (299 aa)
ENSPNYP00000008031Cir_N domain-containing protein. (67 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
smu1SMU1 DNA replication regulator and spliceosomal factor b. (507 aa)
prpf38aPre-mRNA processing factor 38A. (309 aa)
cwc27CWC27 spliceosome associated cyclophilin. (450 aa)
syf2SYF2 pre-mRNA-splicing factor. (238 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (134 aa)
LOC102202464Zgc:158803. (433 aa)
ENSPNYP00000031633Cir_N domain-containing protein. (125 aa)
sf3b2Splicing factor 3b, subunit 2. (740 aa)
zmat2Zinc finger, matrin-type 2. (201 aa)
lsm5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (88 aa)
snw1SNW domain containing 1. (536 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
ENSPNYP00000028858Small nuclear ribonucleoprotein polypeptide F. (85 aa)
ppil1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
cwc15CWC15 spliceosome associated protein homolog. (237 aa)
lsm2Smx5. (140 aa)
dhx16DEAH (Asp-Glu-Ala-His) box polypeptide 16. (970 aa)
sf3a1Splicing factor 3a, subunit 1. (784 aa)
tfip11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (830 aa)
ENSPNYP00000023738LUC7-like (S. cerevisiae). (260 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2063 aa)
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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